SMTL ID : 7aed.1

VirB8 domain of PrgL from Enterococcus faecalis pCF10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 9 residues within 4Å: Chain A: Y.35, Y.36, K.38, L.41, N.69, Q.79, Y.101, E.123 Chain B: N.158 11 PLIP interactions: 2 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:N.158, B:N.158, A:Y.35, A:K.38, A:Q.79, A:Q.79 Water bridges: A:Y.35, A:Y.35, A:Y.35, A:K.38, A:E.64 BTB.2: 8 residues within 4Å: Chain B: Y.35, Y.36, K.38, L.41, N.69, Q.79, Y.101, E.123 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.38, B:Q.79, B:Q.79 Water bridges: B:Y.35, B:Y.35, B:K.38, B:N.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jager, F. et al., Structure of the enterococcal T4SS protein PrgL reveals unique dimerization interface in the VirB8 protein family. Structure (2022)

Release Date

2020-11-18

Peptides

PrgL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PrgL