SMTL ID : 7akn.1

Thermolysin from Bacillus thermoproteolyticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:D.185, A:E.190, A:E.190 CA.2: 5 residues within 4Å: Chain A: E.177, N.183, D.185, E.190, D.191 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:N.183, A:E.190 CA.3: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.1, H2O.1, H2O.4 CA.4: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, A:I.197, A:D.200, H2O.1, H2O.2

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166, H2O.4

1 x VAL: VALINE(Non-covalent)

VAL.6: 8 residues within 4Å: Chain A: N.112, A.113, L.133, E.143, L.202, R.203, H.231 Ligands: LYS.7 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:L.133, A:L.202 Hydrogen bonds: A:E.143, A:R.203, A:R.203, K.7

1 x LYS: LYSINE(Non-covalent)

LYS.7: 6 residues within 4Å: Chain A: N.111, N.112, F.130, L.202, H.231 Ligands: VAL.6 9 PLIP interactions: 7 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:F.130, A:L.202 Hydrogen bonds: A:N.111, A:N.112, A:N.112, A:N.112, K.7 Salt bridges: A:H.231, K.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boikova, A.S. et al., Thermolysin from Bacillus thermoproteolyticus. To Be Published

Release Date

2020-12-02

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolysin

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