- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: Y.256, E.259, M.267, D.273, N.324
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.259, A:M.267, A:D.273, A:D.273, H2O.1
CA.18: 5 residues within 4Å:- Chain B: Y.256, E.259, M.267, D.273, N.324
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.259, B:E.259, B:M.267, B:D.273, B:D.273
- 2 x K: POTASSIUM ION(Non-covalent)
K.4: 2 residues within 4Å:- Chain A: K.454, E.469
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.469, A:E.469, H2O.1, H2O.7, H2O.23
K.19: 2 residues within 4Å:- Chain B: K.454, E.469
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:K.454, B:E.469, H2O.4, H2O.5, H2O.26
- 11 x FMT: FORMIC ACID(Non-functional Binders)
FMT.5: 1 residues within 4Å:- Chain A: K.525
No protein-ligand interaction detected (PLIP)FMT.6: 3 residues within 4Å:- Chain A: Y.429, D.458, R.459
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.459
FMT.7: 6 residues within 4Å:- Chain A: S.134, M.135, T.136, D.141, H.187, T.188
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:M.135, A:T.136, A:T.188
- Water bridges: A:K.143, A:K.143
FMT.8: 0 residues within 4Å:- (No contacts)
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.411
FMT.9: 3 residues within 4Å:- Chain A: D.291, F.292, I.293
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.291
- Water bridges: A:I.293
FMT.15: 4 residues within 4Å:- Chain A: P.611, G.612, H.614
- Chain B: N.203
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Q.175, B:N.203
FMT.20: 6 residues within 4Å:- Chain B: V.521, A.524, K.525, I.529, N.530, L.531
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.525, B:I.529, B:N.530, B:L.531
FMT.21: 3 residues within 4Å:- Chain B: F.606, V.607
- Ligands: B3P.16
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.607
FMT.25: 1 residues within 4Å:- Chain B: N.513
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.513
FMT.26: 3 residues within 4Å:- Chain B: A.554, F.555, Q.558
No protein-ligand interaction detected (PLIP)FMT.27: 3 residues within 4Å:- Chain A: I.578, V.581
- Chain B: F.455
1 PLIP interactions:1 interactions with chain A- Water bridges: A:C.622
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
CUZ.12: 8 residues within 4Å:- Chain A: H.129, H.130, H.178, N.241, H.326, H.382, H.433, H.494
7 PLIP interactions:6 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.130, A:H.178, A:H.326, A:H.382, A:H.433, A:H.494, H2O.2
CUZ.23: 8 residues within 4Å:- Chain B: H.129, H.130, H.178, N.241, H.326, H.382, H.433, H.494
10 PLIP interactions:8 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.129, B:H.130, B:H.178, B:H.326, B:H.382, B:H.433, B:H.433, B:H.494, H2O.34, H2O.34
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
CUA.13: 7 residues within 4Å:- Chain A: Y.583, C.618, W.620, F.621, C.622, H.626, M.629
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:C.618, A:W.620, A:C.622, A:C.622, A:H.626
CUA.24: 7 residues within 4Å:- Chain B: Y.583, C.618, W.620, F.621, C.622, H.626, M.629
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.618, B:W.620, B:C.622, B:C.622
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.61 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 11 x FMT: FORMIC ACID(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B