SMTL ID : 7at6.1

Structure of thaumatin collected by femtosecond serial crystallography on a COC membrane

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 3 residues within 4Å: Chain A: R.29, E.35, S.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.29, A:R.29, A:S.36, A:S.36, A:S.36 Salt bridges: A:R.29 TLA.2: 4 residues within 4Å: Chain A: G.96, K.97, P.194, G.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.96, A:G.96, A:G.195 Salt bridges: A:K.97

4 x PGR: R-1,2-PROPANEDIOL(Non-covalent)

PGR.3: 6 residues within 4Å: Chain A: E.89, F.90, S.91, Y.99, D.101 Ligands: PGR.4 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.49, A:F.90, A:S.91, A:S.91 PGR.4: 5 residues within 4Å: Chain A: E.89, D.101, I.105, F.181 Ligands: PGR.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.181 Water bridges: A:S.103 PGR.5: 2 residues within 4Å: Chain A: E.4, T.38 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.4 Hydrogen bonds: A:T.38 PGR.6: 4 residues within 4Å: Chain A: P.111, A.127, D.129, T.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.127, A:T.206

5 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: D.113, S.115, R.200, T.202 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.115, A:R.200, A:T.202 Water bridges: A:T.202 NA.8: 7 residues within 4Å: Chain A: T.85, L.87, S.103, N.104, I.105, K.106, G.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.87, A:N.104, A:K.106 NA.9: 4 residues within 4Å: Chain A: W.51, A.52, T.86, N.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.52, A:T.86, A:N.109, A:N.109 NA.10: 6 residues within 4Å: Chain A: P.166, S.170, R.171, K.174, S.182, Y.183 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.170, A:S.182 NA.11: 5 residues within 4Å: Chain A: D.101, I.102, V.124, D.179, T.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.102, A:T.189, A:T.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martiel, I. et al., Commissioning results from the SwissMX instrument for fixed target macromolecular crystallography at SwissFEL. To Be Published

Release Date

2021-11-24

Peptides

Thaumatin I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thaumatin I

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