- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.97 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 2 x MD1: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER(Covalent)(Non-covalent)
MD1.5: 33 residues within 4Å:- Chain B: N.70, R.124, K.236, H.273, D.275, H.531, T.652, N.653, V.654, N.655, N.659, K.661, T.680, D.681, I.682, T.685, A.697, N.698, W.700, F.703, D.734, T.915, K.917, V.922, H.923, S.924, Q.925, H.1020, Q.1057, T.1060, P.1098
- Ligands: MD1.6, MO.7
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:R.124, B:K.236, B:K.236, B:H.531, B:N.653, B:N.655, B:N.659, B:N.659, B:T.680, B:T.915, B:K.917, B:S.924, B:Q.925, B:Q.925, B:Q.1057, B:Q.1057
- Salt bridges: B:H.273, B:D.734, B:H.923, B:H.923
- pi-Stacking: B:H.1020
- pi-Cation interactions: B:H.1020
MD1.6: 38 residues within 4Å:- Chain B: N.70, D.71, K.117, D.275, T.305, G.306, K.307, N.308, E.311, N.312, K.313, M.314, I.333, T.334, P.335, E.336, N.352, N.353, D.355, G.526, E.527, G.528, V.529, Y.532, A.563, G.564, V.914, T.915, P.916, K.917, S.918, R.919, T.921, V.922, H.923, K.1099
- Ligands: MD1.5, MO.7
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:K.117, B:G.306, B:N.308, B:N.312, B:N.312, B:K.313, B:K.313, B:I.333, B:N.353, B:D.355, B:E.527, B:E.527, B:G.528, B:Y.532, B:K.917, B:R.919, B:H.923, B:H.923
- Salt bridges: B:D.71, B:D.355, B:K.1099
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.9: 25 residues within 4Å:- Chain A: R.189, R.209, Y.211
- Chain C: Q.84, A.87, A.135, L.136, M.137, P.153, R.154, M.155, L.164, H.166, F.241, G.242, T.243, L.244, N.290, M.291, A.292, W.294, N.302, K.305, I.307, S.308
18 PLIP interactions:13 interactions with chain C, 5 interactions with chain A,- Hydrophobic interactions: C:A.87, C:L.164, C:H.166, C:F.241, C:F.241, C:N.290, C:A.292, C:W.294, C:N.302, C:I.307, A:R.189
- Hydrogen bonds: C:G.242, C:L.244, A:Y.211, A:Y.211
- Salt bridges: C:H.166, A:R.189, A:R.209
- 2 x CA: CALCIUM ION(Non-covalent)
CA.10: 7 residues within 4Å:- Chain C: D.235, Q.247, H.249, Q.250, D.251, D.275, D.278
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.235, C:H.249, C:D.251, C:D.275, C:D.278
CA.11: 6 residues within 4Å:- Chain C: D.117, T.119, N.121, D.132, N.295, G.296
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.117, C:D.117, C:T.119, C:T.119, C:D.132
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chicano, T.M. et al., Structural and functional characterization of the intracellular filament-forming nitrite oxidoreductase multiprotein complex. Nat Microbiol (2021)
- Release Date
- 2021-07-14
- Peptides
- Nitrite oxidoreductase subunit B: A
Nitrite oxidoreductase subunit A: B
Nitrite oxidoreductase subunit C: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
VB
WC
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.97 Å
- Oligo State
- hetero-1-1-1-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 2 x MD1: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER(Covalent)(Non-covalent)
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chicano, T.M. et al., Structural and functional characterization of the intracellular filament-forming nitrite oxidoreductase multiprotein complex. Nat Microbiol (2021)
- Release Date
- 2021-07-14
- Peptides
- Nitrite oxidoreductase subunit B: A
Nitrite oxidoreductase subunit A: B
Nitrite oxidoreductase subunit C: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
VB
WC
X