SMTL ID : 7bb3.1 (1 other biounit)

Structure of S. pombe YG-box oligomer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-tetramer

Ligands

8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MPD.2: 7 residues within 4Å: Chain A: K.42, I.45, M.46 Chain B: W.48 Chain C: T.55 Chain D: Y.49 Ligands: MPD.8 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.48 MPD.3: 6 residues within 4Å: Chain B: K.43, M.46, S.47, Y.50 Chain C: Y.50, Y.54 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:M.46, C:Y.50 MPD.4: 4 residues within 4Å: Chain A: W.48 Chain B: I.45, M.46, Y.49 No protein-ligand interaction detected (PLIP) MPD.5: 5 residues within 4Å: Chain A: Y.49, Y.50, Y.53, Y.54 Chain B: T.55 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.49, A:Y.50, A:Y.53 MPD.6: 4 residues within 4Å: Chain C: K.42, I.45, M.46 Chain D: W.48 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:W.48 MPD.7: 4 residues within 4Å: Chain D: K.43, M.46, S.47, Y.50 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:M.46 MPD.8: 6 residues within 4Å: Chain B: W.48 Chain C: W.48 Chain D: I.45, M.46, Y.49 Ligands: MPD.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Veepaschit, J. et al., Identification and structural analysis of the Schizosaccharomyces pombe SMN complex. Nucleic Acids Res. (2021)

Release Date

2021-01-20

Peptides

Survival motor neuron-like protein 1,Survival motor neuron-like protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Survival motor neuron-like protein 1,Survival motor neuron-like protein 1

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