- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.12 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
UDP.2: 20 residues within 4Å:- Chain B: K.56, G.58, G.59, G.96, G.97, G.98, F.101, R.102, G.103, D.117, G.120, M.121, G.177, M.178, L.180, P.181, F.183, S.184, T.185, T.188
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:G.59, B:G.97, B:G.98, B:G.103, B:D.117, B:D.117, B:M.178, B:L.180, B:T.185, B:T.185, B:T.188
- Salt bridges: B:K.56, B:K.56, B:R.102, B:R.102
UDP.4: 21 residues within 4Å:- Chain C: K.56, G.58, G.59, G.96, G.97, G.98, F.101, R.102, G.103, D.117, G.120, M.121, G.177, M.178, G.179, L.180, P.181, F.183, S.184, T.185, T.188
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:G.59, C:G.97, C:G.98, C:G.103, C:D.117, C:M.178, C:G.179, C:L.180, C:L.180, C:F.183, C:T.185, C:T.185, C:T.185
- Salt bridges: C:K.56, C:R.102, C:R.102
UDP.6: 20 residues within 4Å:- Chain D: K.56, G.58, G.59, G.96, G.97, G.98, F.101, R.102, G.103, D.117, G.120, M.121, G.177, M.178, L.180, P.181, F.183, S.184, T.185, T.188
14 PLIP interactions:14 interactions with chain D- Hydrogen bonds: D:G.59, D:G.97, D:G.98, D:G.103, D:D.117, D:D.117, D:M.178, D:L.180, D:T.185, D:T.185, D:T.185
- Salt bridges: D:K.56, D:R.102, D:R.102
UDP.7: 19 residues within 4Å:- Chain E: K.56, G.58, G.59, G.96, G.97, G.98, F.101, R.102, G.103, D.117, G.120, M.121, G.177, M.178, L.180, P.181, F.183, T.185, T.188
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:G.59, E:G.97, E:G.98, E:G.103, E:D.117, E:M.178, E:G.179, E:L.180, E:F.183, E:T.185, E:T.185, E:T.185
- Salt bridges: E:K.56, E:R.102, E:R.102
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walter, P. et al., Structural basis for the allosteric inhibition of UMP kinase from Gram-positive bacteria, a promising antibacterial target. Febs J. (2022)
- Release Date
- 2022-03-02
- Peptides
- Uridylate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.12 Å
- Oligo State
- homo-hexamer
- Ligands
- 3 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walter, P. et al., Structural basis for the allosteric inhibition of UMP kinase from Gram-positive bacteria, a promising antibacterial target. Febs J. (2022)
- Release Date
- 2022-03-02
- Peptides
- Uridylate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F