- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.33 Å
- Oligo State
- homo-hexamer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
UTP.2: 14 residues within 4Å:- Chain B: R.143, G.151, A.154, E.155, P.156, R.161, H.165, K.168, R.170
- Chain F: L.160, R.161, R.164, K.168
- Ligands: UTP.7
15 PLIP interactions:6 interactions with chain F, 9 interactions with chain B- Salt bridges: F:R.161, F:R.164, F:R.164, F:K.168, F:K.168, F:K.168, B:R.143, B:H.165, B:K.168, B:R.170, B:R.170
- Hydrophobic interactions: B:E.155
- Hydrogen bonds: B:G.151, B:E.155, B:R.161
UTP.3: 15 residues within 4Å:- Chain C: R.143, V.144, G.151, A.154, E.155, P.156, H.165, K.168, R.170
- Chain E: L.158, L.160, R.161, R.164, K.168
- Ligands: UTP.5
17 PLIP interactions:6 interactions with chain E, 11 interactions with chain C- Salt bridges: E:R.161, E:R.164, E:R.164, E:K.168, E:K.168, E:K.168, C:R.143, C:H.165, C:K.168, C:R.170, C:R.170
- Hydrophobic interactions: C:E.155
- Hydrogen bonds: C:R.143, C:V.144, C:G.151, C:E.155, C:E.155
UTP.5: 15 residues within 4Å:- Chain A: L.158, L.160, R.161, R.164, K.168
- Chain E: R.143, G.151, A.154, E.155, P.156, R.161, H.165, K.168, R.170
- Ligands: UTP.3
18 PLIP interactions:12 interactions with chain E, 6 interactions with chain A- Hydrophobic interactions: E:E.155
- Hydrogen bonds: E:R.143, E:V.144, E:G.151, E:E.155
- Salt bridges: E:R.143, E:R.161, E:R.161, E:R.161, E:K.168, E:R.170, E:R.170, A:R.161, A:R.164, A:R.164, A:K.168, A:K.168, A:K.168
UTP.7: 15 residues within 4Å:- Chain D: L.158, L.160, R.161, R.164, K.168
- Chain F: R.143, V.144, G.151, A.154, E.155, R.161, H.165, K.168, R.170
- Ligands: UTP.2
19 PLIP interactions:6 interactions with chain D, 13 interactions with chain F- Salt bridges: D:R.161, D:R.164, D:R.164, D:K.168, D:K.168, D:K.168, F:R.143, F:R.161, F:R.161, F:R.161, F:H.165, F:K.168, F:R.170, F:R.170
- Hydrophobic interactions: F:E.155
- Hydrogen bonds: F:R.143, F:V.144, F:G.151, F:E.155
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walter, P. et al., Structural basis for the allosteric inhibition of UMP kinase from Gram-positive bacteria, a promising antibacterial target. Febs J. (2022)
- Release Date
- 2022-03-02
- Peptides
- Uridylate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
AC
FD
EE
DF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.33 Å
- Oligo State
- homo-hexamer
- Ligands
- 4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walter, P. et al., Structural basis for the allosteric inhibition of UMP kinase from Gram-positive bacteria, a promising antibacterial target. Febs J. (2022)
- Release Date
- 2022-03-02
- Peptides
- Uridylate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
AC
FD
EE
DF
C