SMTL ID : 7bru.1

Crystal structure of human RTN3 LIR fused to human GABARAP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-trimer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: K.12, D.16, N.103, H.120 Chain B: Q.81 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.81, A:N.103 Salt bridges: A:K.12, A:H.120 PO4.2: 3 residues within 4Å: Chain A: G.1 Chain B: P.32, K.35 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.35 PO4.3: 5 residues within 4Å: Chain A: S.4 Chain B: Y.27, E.30, H.31, K.69 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Water bridges: B:K.69 Salt bridges: B:H.31, B:K.69 Hydrogen bonds: A:S.4 PO4.4: 5 residues within 4Å: Chain B: K.12, D.16, N.103, E.119, H.120 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.103, C:Q.81 Salt bridges: B:K.12, B:H.120 PO4.5: 6 residues within 4Å: Chain A: Y.27, H.31, E.39, K.70 Chain C: E.3, S.4 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:E.39, A:E.39, C:S.4 Water bridges: A:Y.27 Salt bridges: A:H.31, A:K.70 PO4.6: 5 residues within 4Å: Chain A: Q.81 Chain C: K.12, D.16, N.103, H.120 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Salt bridges: C:K.12, C:H.120 Hydrogen bonds: A:Q.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mochida, K. et al., Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes. Nat Commun (2020)

Release Date

2020-07-08

Peptides

Reticulon-3,Gamma-aminobutyric acid receptor-associated protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Reticulon-3,Gamma-aminobutyric acid receptor-associated protein