SMTL ID : 7c2x.1

Crystal Structure of Glycyrrhiza uralensis UGT73P12 complexed with glycyrrhetinic acid 3-O-monoglucuronide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 15 residues within 4Å: Chain A: S.28, I.31, R.269, G.299, S.300, V.326, W.359, A.360, Q.362, H.377, G.379, W.380, N.381, T.382, E.385 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.28, A:S.28, A:R.269, A:S.300, A:M.301, A:A.360, A:A.360, A:Q.362, A:Q.362, A:N.381, A:N.381, A:T.382, A:T.382, A:E.385 Water bridges: A:S.28, A:R.269, A:L.363, A:W.380, A:Q.402 Salt bridges: A:H.377, A:H.377 pi-Stacking: A:W.359

1 x FJL: (2~{S},3~{S},4~{S},5~{R},6~{R})-6-[[(3~{S},4~{a}~{R},6~{a}~{R},6~{b}~{S},8~{a}~{S},11~{S},12~{a}~{R},14~{a}~{R},14~{b}~{S})-11-carboxy-4,4,6~{a},6~{b},8~{a},11,14~{b}-heptamethyl-14-oxidanylidene-2,3,4~{a},5,6,7,8,9,10,12,12~{a},14~{a}-dodecahydro-1~{H}-picen-3-yl]oxy]-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid(Non-covalent)

FJL.2: 13 residues within 4Å: Chain A: S.26, H.29, Y.106, Y.133, G.153, G.154, Q.159, W.200, E.207, Y.208, A.400, E.401, W.427 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.106, A:Y.133, A:W.427 Hydrogen bonds: A:Y.133, A:Q.159, A:Y.208, A:Y.208 Water bridges: A:S.28, A:S.28, A:S.28, A:H.29, A:G.153 Salt bridges: A:H.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Crystal Structure of Glycyrrhiza uralensis UGT73P12 complexed with glycyrrhetinic acid 3-O-monoglucuronide. To Be Published

Release Date

2021-05-12

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase