- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.89 Å
- Oligo State
- hetero-1-1-1-1-16-16-1-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.1: 26 residues within 4Å:- Chain A: Y.54, Q.55, N.56, V.57, Q.58, V.59, L.60, F.68, M.72, V.73, T.76, S.80, G.84, C.85, C.88, H.89, W.94, A.95, K.102, S.105, R.106, F.109
- Ligands: HEM.2
- Chain a: F.48, L.63, S.77
23 PLIP interactions:21 interactions with chain A, 2 interactions with chain a,- Hydrophobic interactions: A:Y.54, A:Y.54, A:M.72, A:V.73, A:W.94, A:W.94, A:W.94, A:W.94, A:K.102, A:F.109, a:F.48, a:L.63
- Hydrogen bonds: A:Q.55, A:N.56, A:N.56, A:N.56, A:Q.58, A:V.59, A:L.60
- Salt bridges: A:K.102, A:R.106
- pi-Stacking: A:F.68
- Metal complexes: A:H.89
HEM.2: 24 residues within 4Å:- Chain A: V.79, Y.87, Y.100, T.101, V.104, S.105, M.108, F.109, V.112, T.129, C.130, C.133, H.134, P.138, V.139, P.140, L.269, R.273, L.281, R.282, V.283, C.288
- Ligands: HEM.1, HEM.4
12 PLIP interactions:12 interactions with chain A,- Hydrophobic interactions: A:V.79, A:V.79, A:V.104, A:M.108, A:F.109, A:V.112, A:L.281
- Hydrogen bonds: A:Y.87, A:Y.100
- Salt bridges: A:R.273, A:R.273
- Metal complexes: A:H.134
HEM.3: 25 residues within 4Å:- Chain A: I.188, R.189, I.190, T.191, T.210, F.211, M.214, I.217, S.218, L.221, V.223, G.224, C.225, C.228, H.229, F.234, N.235, W.237, R.244, A.247, W.248, R.252
- Chain B: L.174
- Chain C: I.191, Y.317
23 PLIP interactions:21 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C,- Hydrophobic interactions: A:I.190, A:T.210, A:F.211, A:M.214, A:I.217, A:L.221, A:V.223, A:F.234, A:F.234, A:F.234, A:W.237, A:R.244, A:A.247, A:W.248, B:L.174, C:I.191
- Hydrogen bonds: A:I.190, A:T.191, A:T.191, A:R.244
- Salt bridges: A:R.252
- pi-Cation interactions: A:R.244
- Metal complexes: A:H.229
HEM.4: 24 residues within 4Å:- Chain A: H.122, V.123, A.124, T.126, G.127, V.128, I.217, L.221, F.227, K.243, T.246, A.247, A.250, I.251, V.254, V.283, S.284, C.285, C.288, H.289, N.293, K.294, P.295
- Ligands: HEM.2
18 PLIP interactions:18 interactions with chain A,- Hydrophobic interactions: A:V.123, A:V.128, A:I.217, A:L.221, A:T.246, A:A.247, A:A.250, A:V.254, A:V.283, A:P.295
- Hydrogen bonds: A:T.126, A:N.293
- Salt bridges: A:K.243, A:K.294, A:K.294
- pi-Stacking: A:H.289
- Metal complexes: A:H.122, A:H.289
- 17 x CA: CALCIUM ION(Non-covalent)
CA.5: 4 residues within 4Å:- Chain A: Q.161, N.162, E.208
- Chain C: E.96
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.208
CA.40: 4 residues within 4Å:- Chain 9: W.46
- Chain E: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain 9- Metal complexes: E:W.46, E:D.49, E:I.51, 9:W.46
CA.45: 4 residues within 4Å:- Chain F: W.46
- Chain G: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain G, 1 interactions with chain F- Metal complexes: G:W.46, G:D.49, G:I.51, F:W.46
CA.51: 4 residues within 4Å:- Chain H: W.46
- Chain I: W.46, D.49, I.51
5 PLIP interactions:4 interactions with chain I, 1 interactions with chain H- Metal complexes: I:W.46, I:D.49, I:D.49, I:I.51, H:W.46
CA.55: 4 residues within 4Å:- Chain J: W.46
- Chain K: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain K, 1 interactions with chain J- Metal complexes: K:W.46, K:D.49, K:I.51, J:W.46
CA.60: 4 residues within 4Å:- Chain L: W.46
- Chain M: W.46, D.49, I.51
5 PLIP interactions:4 interactions with chain M, 1 interactions with chain L- Metal complexes: M:W.46, M:D.49, M:D.49, M:I.51, L:W.46
CA.65: 4 residues within 4Å:- Chain N: W.46
- Chain O: W.46, D.49, I.51
5 PLIP interactions:4 interactions with chain O, 1 interactions with chain N- Metal complexes: O:W.46, O:D.49, O:D.49, O:I.51, N:W.46
CA.71: 4 residues within 4Å:- Chain P: W.46
- Chain Q: W.46, D.49, I.51
5 PLIP interactions:4 interactions with chain Q, 1 interactions with chain P- Metal complexes: Q:W.46, Q:D.49, Q:D.49, Q:I.51, P:W.46
CA.74: 4 residues within 4Å:- Chain R: W.46
- Chain S: W.46, D.49, I.51
5 PLIP interactions:4 interactions with chain S, 1 interactions with chain R- Metal complexes: S:W.46, S:D.49, S:D.49, S:I.51, R:W.46
CA.79: 4 residues within 4Å:- Chain T: W.46
- Chain U: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain U, 1 interactions with chain T- Metal complexes: U:W.46, U:D.49, U:I.51, T:W.46
CA.85: 4 residues within 4Å:- Chain V: W.46
- Chain W: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain W, 1 interactions with chain V- Metal complexes: W:W.46, W:D.49, W:I.51, V:W.46
CA.90: 4 residues within 4Å:- Chain X: W.46
- Chain Y: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain Y, 1 interactions with chain X- Metal complexes: Y:W.46, Y:D.49, Y:I.51, X:W.46
CA.95: 4 residues within 4Å:- Chain 0: W.46, D.49, I.51
- Chain Z: W.46
4 PLIP interactions:3 interactions with chain 0, 1 interactions with chain Z- Metal complexes: 0:W.46, 0:D.49, 0:I.51, Z:W.46
CA.102: 4 residues within 4Å:- Chain 1: W.46
- Chain 2: W.46, D.49, I.51
5 PLIP interactions:4 interactions with chain 2, 1 interactions with chain 1- Metal complexes: 2:W.46, 2:D.49, 2:D.49, 2:I.51, 1:W.46
CA.109: 4 residues within 4Å:- Chain 3: W.46
- Chain 4: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain 4, 1 interactions with chain 3- Metal complexes: 4:W.46, 4:D.49, 4:I.51, 3:W.46
CA.112: 4 residues within 4Å:- Chain 5: W.46
- Chain 6: W.46, D.49, I.51
5 PLIP interactions:4 interactions with chain 6, 1 interactions with chain 5- Metal complexes: 6:W.46, 6:D.49, 6:D.49, 6:I.51, 5:W.46
CA.116: 4 residues within 4Å:- Chain 7: W.46
- Chain 8: W.46, D.49, I.51
4 PLIP interactions:3 interactions with chain 8, 1 interactions with chain 7- Metal complexes: 8:W.46, 8:D.49, 8:I.51, 7:W.46
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: E.9, N.20, Y.22, R.27, V.223, F.227, N.293
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.9, A:N.20, A:R.27, A:R.27
GOL.34: 7 residues within 4Å:- Chain B: M.3, K.8, R.11
- Chain D: P.96, G.97, S.98
- Ligands: PGV.118
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:G.97, D:S.98, B:R.11
- 1 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Covalent)
LHG.7: 6 residues within 4Å:- Chain A: C.1
- Chain B: W.264, W.271, W.274
- Ligands: PGV.8, PGV.98
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:W.274
- 10 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Covalent)(Non-covalent)
PGV.8: 8 residues within 4Å:- Chain A: C.1
- Chain B: W.252, I.259, F.263, W.271
- Ligands: LHG.7, UQ8.19, PGV.29
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:W.252, B:W.252, B:F.263, B:W.271
PGV.15: 20 residues within 4Å:- Chain B: I.50, V.51, P.61, S.63, Q.66, Y.68, N.69, L.70, I.73, Y.157
- Chain E: L.34, I.38, S.41
- Chain G: M.37, L.40, N.45, D.48
- Ligands: BCL.9, BPH.11, PGV.49
11 PLIP interactions:7 interactions with chain B, 1 interactions with chain G, 3 interactions with chain E- Hydrophobic interactions: B:I.50, B:V.51, B:Y.68, B:Y.68, B:L.70, B:I.73, E:L.34, E:I.38
- Hydrogen bonds: B:P.61, G:N.45, E:S.41
PGV.16: 16 residues within 4Å:- Chain B: I.107, A.110, L.111, V.114, R.118, F.124, P.127, F.128, S.131, I.134, G.135, L.138
- Chain D: R.254, L.258
- Ligands: UQ8.17, PGV.29
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain D- Hydrophobic interactions: B:I.107, B:A.110, B:L.111, B:L.111, B:V.114, B:I.134, B:L.138, D:L.258
- Salt bridges: B:R.118
- Hydrogen bonds: D:R.254, D:R.254
PGV.29: 17 residues within 4Å:- Chain B: F.124, H.125, F.128, S.131, F.132, V.139, F.244, F.251, A.254
- Chain C: P.2, E.3, Q.5, I.7, I.43
- Ligands: PGV.8, PGV.16, CDL.31
16 PLIP interactions:5 interactions with chain C, 11 interactions with chain B- Hydrophobic interactions: C:I.7, C:I.7, C:I.43, B:F.128, B:F.128, B:F.128, B:F.132, B:V.139, B:F.244, B:F.244, B:F.244, B:F.244, B:F.251, B:A.254
- Hydrogen bonds: C:E.3, C:Q.5
PGV.30: 15 residues within 4Å:- Chain B: L.194, V.229, G.230, Y.231
- Chain C: I.31, G.32, R.33, I.35, I.48, G.49, P.50, I.51
- Ligands: UQ8.12, CDL.76, CDL.81
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:I.35, B:L.194, B:Y.231
- Hydrogen bonds: C:R.33, C:R.33
PGV.36: 16 residues within 4Å:- Chain B: W.71
- Chain C: P.200, L.204, H.301, G.302, M.303
- Chain D: Y.8, Q.13, I.16, W.17, W.20, F.24
- Ligands: BCL.9, LMT.37, CDL.38, PGV.49
11 PLIP interactions:4 interactions with chain D, 5 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: D:W.20, D:W.20, C:P.200, C:L.204, B:W.71
- Hydrogen bonds: D:Y.8, D:Q.13, C:H.301, C:G.302, B:N.69
- Salt bridges: C:H.301
PGV.49: 9 residues within 4Å:- Chain B: N.69, L.70
- Chain G: L.34, M.37, I.38, S.41
- Ligands: PGV.15, PGV.36, LMT.37
7 PLIP interactions:3 interactions with chain G, 4 interactions with chain B- Hydrophobic interactions: G:L.34, G:I.38, B:L.70
- Hydrogen bonds: G:S.41, B:N.69, B:L.70, B:R.72
PGV.98: 9 residues within 4Å:- Chain 0: M.37, L.40, S.41, N.45, D.48
- Chain Y: L.34, I.38, S.41
- Ligands: LHG.7
4 PLIP interactions:2 interactions with chain Y, 2 interactions with chain 0- Hydrophobic interactions: Y:L.34, Y:I.38
- Hydrogen bonds: 0:N.45, 0:D.48
PGV.105: 18 residues within 4Å:- Chain 2: M.37, I.38, S.41, D.43
- Chain 4: L.34, M.37, L.40, N.45, D.48
- Chain A: P.5, K.24
- Chain B: L.84, L.146, L.147, G.149, F.263
- Ligands: UQ8.18, CRT.106
13 PLIP interactions:4 interactions with chain B, 4 interactions with chain A, 3 interactions with chain 2, 2 interactions with chain 4- Hydrophobic interactions: B:L.84, B:L.146, B:L.147, B:F.263, A:P.5, 2:M.37, 2:I.38, 4:L.34, 4:L.40
- Hydrogen bonds: A:Y.22, 2:S.41
- Salt bridges: A:K.24, A:K.24
PGV.118: 19 residues within 4Å:- Chain 8: L.15, R.19, V.20, S.23
- Chain B: A.2, V.27, G.28
- Chain D: S.43, D.44, R.45, P.96
- Chain E: R.18, R.19, V.22, S.23, A.26
- Ligands: GOL.34, CDL.38, CDL.48
13 PLIP interactions:1 interactions with chain B, 7 interactions with chain E, 3 interactions with chain 8, 2 interactions with chain D- Hydrogen bonds: B:G.28, E:R.18, D:D.44, D:R.45
- Hydrophobic interactions: E:V.22, E:V.22, E:A.26, 8:V.20
- Salt bridges: E:R.18, E:R.18, E:R.19, 8:R.19, 8:R.19
- 36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.9: 23 residues within 4Å:- Chain B: V.47, F.106, Y.137, L.140, F.155, I.159, L.160, H.162, L.163
- Chain C: Y.197, M.203, I.206, A.207, Y.210, G.211, L.214
- Ligands: BCL.10, BPH.11, PGV.15, BCL.20, MQ8.23, PGV.36, CDL.38
14 PLIP interactions:9 interactions with chain B, 5 interactions with chain C,- Hydrophobic interactions: B:V.47, B:F.106, B:Y.137, B:L.140, B:F.155, B:F.155, B:I.159, B:L.163, C:Y.197, C:I.206, C:I.206, C:L.214
- Metal complexes: B:H.162
- pi-Stacking: C:Y.210
BCL.10: 29 residues within 4Å:- Chain B: F.106, A.133, I.134, A.136, Y.137, L.140, W.165, V.166, S.167, V.169, Y.171, F.176, H.177, H.182, A.185, I.186, F.189, S.253, C.256, I.257
- Chain C: T.186, Y.197, Y.210
- Ligands: BCL.9, BPH.11, BCL.13, BCL.20, MQ8.23, CDL.38
16 PLIP interactions:15 interactions with chain B, 1 interactions with chain C,- Hydrophobic interactions: B:F.106, B:A.133, B:A.136, B:L.140, B:V.166, B:V.169, B:Y.171, B:F.176, B:A.185, B:I.186, B:F.189, B:F.189, B:I.257, C:Y.210
- Hydrogen bonds: B:S.253
- Metal complexes: B:H.182
BCL.13: 18 residues within 4Å:- Chain B: H.177, M.183, I.186, S.187, F.190, T.191, L.194
- Chain C: Y.157, L.160, I.179, H.182, L.183, T.186
- Ligands: BCL.10, UQ8.19, BCL.20, BPH.21, CRT.24
11 PLIP interactions:5 interactions with chain C, 6 interactions with chain B,- Hydrophobic interactions: C:Y.157, C:L.160, C:I.179, C:L.183, B:I.186, B:I.186, B:L.194
- Metal complexes: C:H.182
- Hydrogen bonds: B:T.191, B:T.191
- pi-Stacking: B:F.190
BCL.20: 32 residues within 4Å:- Chain B: V.166, Y.171, H.177, F.190
- Chain C: I.71, I.126, F.150, A.153, F.156, Y.157, L.160, W.185, T.186, A.187, F.189, S.190, L.196, Y.197, H.202, S.205, I.206, L.209, Y.210, T.276, V.277, A.280, I.284
- Ligands: BCL.9, BCL.10, BCL.13, BPH.21, CRT.24
22 PLIP interactions:22 interactions with chain C,- Hydrophobic interactions: C:I.71, C:I.126, C:F.150, C:A.153, C:F.156, C:F.156, C:Y.157, C:W.185, C:T.186, C:F.189, C:L.196, C:L.196, C:Y.197, C:Y.197, C:I.206, C:L.209, C:Y.210, C:T.276
- Hydrogen bonds: C:Y.197, C:S.205
- Salt bridges: C:H.202
- Metal complexes: C:H.202
BCL.39: 17 residues within 4Å:- Chain 8: I.35
- Chain 9: L.47
- Chain E: Q.28, I.29, G.32, H.36, W.46, L.47
- Chain F: W.29, L.32, V.33, A.36, H.37, A.40
- Ligands: BCL.41, BCL.117, CRT.119
12 PLIP interactions:6 interactions with chain E, 4 interactions with chain F, 1 interactions with chain 9, 1 interactions with chain 8,- Hydrophobic interactions: E:Q.28, E:I.29, E:W.46, E:W.46, E:W.46, F:W.29, F:W.29, F:A.36, F:A.40, 9:L.47, 8:I.35
- Metal complexes: E:H.36
BCL.41: 15 residues within 4Å:- Chain E: Q.28, L.31, G.32, I.35, H.36
- Chain F: W.29, F.30, V.33, H.37, W.46
- Chain G: L.47
- Chain H: L.39
- Ligands: BCL.39, CRT.43, BCL.44
13 PLIP interactions:4 interactions with chain E, 7 interactions with chain F, 1 interactions with chain H, 1 interactions with chain G,- Hydrophobic interactions: E:L.31, E:I.35, E:I.35, F:F.30, F:V.33, F:W.46, F:W.46, F:W.46, F:W.46, H:L.39, G:L.47
- Hydrogen bonds: E:Q.28
- Metal complexes: F:H.37
BCL.44: 14 residues within 4Å:- Chain E: I.35
- Chain G: Q.28, I.29, G.32, H.36, W.46
- Chain H: W.29, L.32, V.33, A.36, H.37
- Ligands: BCL.41, CRT.43, BCL.46
12 PLIP interactions:4 interactions with chain H, 7 interactions with chain G, 1 interactions with chain E,- Hydrophobic interactions: H:W.29, H:W.29, H:L.32, H:A.36, G:Q.28, G:I.29, G:W.46, G:W.46, G:W.46, E:I.35
- pi-Stacking: G:H.36
- Metal complexes: G:H.36
BCL.46: 16 residues within 4Å:- Chain G: Q.28, L.31, G.32, I.35, H.36, V.39
- Chain H: F.30, V.33, V.34, H.37, W.46
- Chain I: L.47
- Chain J: L.39
- Ligands: CRT.42, BCL.44, BCL.50
14 PLIP interactions:4 interactions with chain G, 8 interactions with chain H, 1 interactions with chain I, 1 interactions with chain J,- Hydrophobic interactions: G:I.35, G:I.35, G:V.39, H:F.30, H:V.33, H:V.34, H:W.46, H:W.46, H:W.46, H:W.46, I:L.47, J:L.39
- Hydrogen bonds: G:Q.28
- Metal complexes: H:H.37
BCL.50: 16 residues within 4Å:- Chain G: I.35
- Chain H: L.47
- Chain I: Q.28, I.29, G.32, H.36, W.46, L.47
- Chain J: W.29, L.32, V.33, A.36, H.37
- Ligands: CRT.42, BCL.46, BCL.52
11 PLIP interactions:6 interactions with chain I, 1 interactions with chain G, 1 interactions with chain H, 3 interactions with chain J,- Hydrophobic interactions: I:Q.28, I:I.29, I:W.46, I:W.46, I:W.46, G:I.35, H:L.47, J:W.29, J:W.29, J:A.36
- Metal complexes: I:H.36
BCL.52: 17 residues within 4Å:- Chain I: Q.28, L.31, G.32, I.35, H.36
- Chain J: W.29, F.30, V.33, V.34, H.37, W.46, L.47
- Chain K: L.47
- Chain L: L.39
- Ligands: BCL.50, CRT.53, BCL.54
15 PLIP interactions:9 interactions with chain J, 1 interactions with chain K, 4 interactions with chain I, 1 interactions with chain L,- Hydrophobic interactions: J:F.30, J:V.33, J:V.33, J:V.34, J:W.46, J:W.46, J:W.46, J:L.47, K:L.47, I:L.31, I:I.35, I:I.35, L:L.39
- Metal complexes: J:H.37
- Hydrogen bonds: I:Q.28
BCL.54: 15 residues within 4Å:- Chain I: I.35
- Chain J: L.47
- Chain K: Q.28, I.29, H.36, W.46, L.47
- Chain L: W.29, L.32, V.33, A.36, H.37
- Ligands: BCL.52, CRT.53, BCL.58
11 PLIP interactions:6 interactions with chain K, 1 interactions with chain J, 3 interactions with chain L, 1 interactions with chain I,- Hydrophobic interactions: K:Q.28, K:I.29, K:W.46, K:W.46, K:W.46, J:L.47, L:W.29, L:W.29, L:A.36, I:I.35
- Metal complexes: K:H.36
BCL.58: 16 residues within 4Å:- Chain K: Q.28, L.31, G.32, I.35, H.36, V.39
- Chain L: F.30, V.33, V.34, H.37, W.46
- Chain M: L.47
- Chain N: L.39
- Ligands: BCL.54, CRT.57, BCL.59
13 PLIP interactions:8 interactions with chain L, 3 interactions with chain K, 1 interactions with chain M, 1 interactions with chain N,- Hydrophobic interactions: L:F.30, L:V.33, L:V.34, L:H.37, L:W.46, L:W.46, L:W.46, K:L.31, K:V.39, M:L.47, N:L.39
- Metal complexes: L:H.37
- Hydrogen bonds: K:Q.28
BCL.59: 16 residues within 4Å:- Chain K: I.35
- Chain L: L.47
- Chain M: Q.28, I.29, G.32, H.36, W.46, L.47
- Chain N: W.29, L.32, V.33, A.36, H.37
- Ligands: CRT.57, BCL.58, BCL.61
12 PLIP interactions:4 interactions with chain N, 1 interactions with chain L, 6 interactions with chain M, 1 interactions with chain K,- Hydrophobic interactions: N:W.29, N:W.29, N:W.29, N:A.36, L:L.47, M:Q.28, M:W.46, M:W.46, M:W.46, M:W.46, K:I.35
- Metal complexes: M:H.36
BCL.61: 15 residues within 4Å:- Chain M: Q.28, L.31, G.32, I.35, H.36
- Chain N: F.30, V.33, V.34, H.37, W.41, W.46
- Chain O: L.47
- Ligands: BCL.59, CRT.63, BCL.64
14 PLIP interactions:9 interactions with chain N, 4 interactions with chain M, 1 interactions with chain O,- Hydrophobic interactions: N:F.30, N:V.33, N:V.34, N:W.41, N:W.46, N:W.46, N:W.46, N:W.46, M:L.31, M:I.35, M:I.35, O:L.47
- Metal complexes: N:H.37
- Hydrogen bonds: M:Q.28
BCL.64: 15 residues within 4Å:- Chain M: I.35
- Chain N: L.47
- Chain O: Q.28, I.29, G.32, H.36, W.46
- Chain P: W.29, L.32, V.33, A.36, H.37
- Ligands: BCL.61, CRT.63, BCL.69
12 PLIP interactions:4 interactions with chain P, 1 interactions with chain N, 6 interactions with chain O, 1 interactions with chain M,- Hydrophobic interactions: P:W.29, P:W.29, P:W.29, P:A.36, N:L.47, O:Q.28, O:I.29, O:W.46, O:W.46, O:W.46, M:I.35
- Metal complexes: O:H.36
BCL.69: 15 residues within 4Å:- Chain O: Q.28, L.31, G.32, I.35, H.36
- Chain P: F.30, V.33, H.37, W.41, W.46, L.47
- Chain Q: L.47
- Ligands: BCL.64, CRT.68, BCL.70
13 PLIP interactions:10 interactions with chain P, 1 interactions with chain Q, 2 interactions with chain O,- Hydrophobic interactions: P:V.33, P:W.41, P:W.41, P:W.41, P:W.41, P:W.46, P:W.46, P:W.46, P:L.47, Q:L.47, O:I.35
- Metal complexes: P:H.37
- Hydrogen bonds: O:Q.28
BCL.70: 16 residues within 4Å:- Chain O: I.35
- Chain P: L.47
- Chain Q: Q.28, I.29, G.32, H.36, W.46
- Chain R: W.29, L.32, V.33, A.36, H.37, A.40
- Ligands: CRT.68, BCL.69, BCL.72
12 PLIP interactions:6 interactions with chain Q, 4 interactions with chain R, 1 interactions with chain P, 1 interactions with chain O,- Hydrophobic interactions: Q:Q.28, Q:I.29, Q:W.46, Q:W.46, Q:W.46, R:W.29, R:W.29, R:A.36, R:A.40, P:L.47, O:I.35
- Metal complexes: Q:H.36
BCL.72: 14 residues within 4Å:- Chain Q: Q.28, L.31, G.32, I.35, H.36
- Chain R: F.30, V.33, H.37, W.41, W.46
- Chain S: L.47
- Ligands: CRT.66, BCL.70, BCL.73
13 PLIP interactions:4 interactions with chain Q, 8 interactions with chain R, 1 interactions with chain S,- Hydrophobic interactions: Q:L.31, Q:I.35, R:F.30, R:V.33, R:W.41, R:W.41, R:W.46, R:W.46, R:W.46, S:L.47
- Hydrogen bonds: Q:Q.28
- pi-Stacking: Q:H.36
- Metal complexes: R:H.37
BCL.73: 16 residues within 4Å:- Chain Q: I.35
- Chain R: L.47
- Chain S: V.25, Q.28, H.36, W.46, L.47
- Chain T: W.29, L.32, V.33, A.36, H.37
- Ligands: CRT.66, BCL.72, BCL.75, CDL.76
13 PLIP interactions:7 interactions with chain S, 2 interactions with chain Q, 3 interactions with chain T, 1 interactions with chain R,- Hydrophobic interactions: S:V.25, S:Q.28, S:W.46, S:W.46, S:W.46, S:W.46, Q:I.35, Q:I.35, T:W.29, T:W.29, T:A.36, R:L.47
- Metal complexes: S:H.36
BCL.75: 15 residues within 4Å:- Chain S: Q.28, L.31, G.32, I.35, H.36
- Chain T: F.30, V.33, H.37, W.41, W.46, L.47
- Chain U: L.47
- Ligands: BCL.73, CRT.77, BCL.78
13 PLIP interactions:4 interactions with chain S, 1 interactions with chain U, 8 interactions with chain T,- Hydrophobic interactions: S:L.31, S:I.35, S:I.35, U:L.47, T:V.33, T:V.33, T:W.46, T:W.46, T:W.46, T:W.46, T:L.47
- Hydrogen bonds: S:Q.28
- Metal complexes: T:H.37
BCL.78: 16 residues within 4Å:- Chain S: I.35
- Chain T: L.47
- Chain U: Q.28, I.29, G.32, H.36, W.46
- Chain V: W.29, L.32, V.33, A.36, H.37
- Ligands: BCL.75, CRT.77, BCL.80, CDL.81
13 PLIP interactions:6 interactions with chain U, 5 interactions with chain V, 1 interactions with chain S, 1 interactions with chain T,- Hydrophobic interactions: U:Q.28, U:W.46, U:W.46, U:W.46, U:W.46, V:W.29, V:W.29, V:L.32, V:L.32, V:A.36, S:I.35, T:L.47
- Metal complexes: U:H.36
BCL.80: 15 residues within 4Å:- Chain U: Q.28, L.31, G.32, I.35, H.36
- Chain V: W.29, F.30, V.33, H.37, W.41, W.46
- Chain W: L.47
- Ligands: BCL.78, CRT.82, BCL.83
14 PLIP interactions:3 interactions with chain U, 10 interactions with chain V, 1 interactions with chain W,- Hydrophobic interactions: U:L.31, U:I.35, V:F.30, V:V.33, V:V.33, V:W.41, V:W.41, V:W.46, V:W.46, V:W.46, V:W.46, W:L.47
- Hydrogen bonds: U:Q.28
- Metal complexes: V:H.37
BCL.83: 17 residues within 4Å:- Chain U: I.35
- Chain V: L.47
- Chain W: Q.28, I.29, G.32, H.36, W.46, L.47
- Chain X: W.29, L.32, V.33, A.36, H.37, A.40
- Ligands: BCL.80, CRT.82, BCL.86
10 PLIP interactions:4 interactions with chain X, 4 interactions with chain W, 1 interactions with chain V, 1 interactions with chain U,- Hydrophobic interactions: X:W.29, X:L.32, X:L.32, X:A.36, W:Q.28, W:I.29, W:W.46, V:L.47, U:I.35
- Metal complexes: W:H.36
BCL.86: 14 residues within 4Å:- Chain W: Q.28, L.31, G.32, I.35, H.36
- Chain X: W.29, F.30, V.33, H.37, W.46
- Chain Y: L.47
- Ligands: BCL.83, CRT.84, BCL.89
9 PLIP interactions:3 interactions with chain W, 1 interactions with chain Y, 5 interactions with chain X,- Hydrophobic interactions: W:I.35, W:I.35, Y:L.47, X:F.30, X:W.46, X:W.46, X:W.46
- Hydrogen bonds: W:Q.28
- Metal complexes: X:H.37
BCL.89: 13 residues within 4Å:- Chain W: I.35
- Chain Y: Q.28, H.36, W.46, L.47
- Chain Z: W.29, L.32, V.33, A.36, H.37
- Ligands: CRT.84, BCL.86, BCL.91
13 PLIP interactions:1 interactions with chain W, 5 interactions with chain Y, 7 interactions with chain Z,- Hydrophobic interactions: W:I.35, Y:Q.28, Y:W.46, Y:W.46, Y:W.46, Z:W.29, Z:W.29, Z:W.29, Z:W.29, Z:L.32, Z:L.32, Z:A.36
- Metal complexes: Y:H.36
BCL.91: 17 residues within 4Å:- Chain 0: L.47
- Chain Y: Q.28, L.31, G.32, I.35, H.36, V.39
- Chain Z: W.29, F.30, V.33, V.34, H.37, W.41, W.46
- Ligands: BCL.89, CRT.93, BCL.94
14 PLIP interactions:5 interactions with chain Y, 8 interactions with chain Z, 1 interactions with chain 0,- Hydrophobic interactions: Y:L.31, Y:I.35, Y:I.35, Y:V.39, Z:F.30, Z:F.30, Z:V.33, Z:V.34, Z:W.41, Z:W.46, Z:W.46, 0:L.47
- Hydrogen bonds: Y:Q.28
- Metal complexes: Z:H.37
BCL.94: 20 residues within 4Å:- Chain 0: Q.28, I.29, G.32, H.36, W.46
- Chain 1: W.29, L.32, V.33, A.36, H.37
- Chain Y: S.23, I.24, A.26, F.27, I.35
- Ligands: BCL.91, CDL.92, CRT.93, CDL.97, BCL.100
10 PLIP interactions:3 interactions with chain Y, 5 interactions with chain 0, 2 interactions with chain 1,- Hydrophobic interactions: Y:I.24, Y:A.26, Y:I.35, 0:Q.28, 0:W.46, 0:W.46, 0:W.46, 1:W.29, 1:A.36
- Metal complexes: 0:H.36
BCL.100: 15 residues within 4Å:- Chain 0: Q.28, L.31, G.32, I.35, H.36, L.44
- Chain 1: F.30, V.33, H.37, W.41, W.46
- Chain 2: L.47
- Ligands: BCL.94, CRT.99, BCL.101
18 PLIP interactions:12 interactions with chain 1, 5 interactions with chain 0, 1 interactions with chain 2,- Hydrophobic interactions: 1:F.30, 1:F.30, 1:F.30, 1:V.33, 1:W.41, 1:W.41, 1:W.41, 1:W.46, 1:W.46, 1:W.46, 1:W.46, 0:L.31, 0:I.35, 0:I.35, 0:L.44, 2:L.47
- Metal complexes: 1:H.37
- Hydrogen bonds: 0:Q.28
BCL.101: 16 residues within 4Å:- Chain 0: I.35
- Chain 1: F.30, L.47
- Chain 2: Q.28, G.32, H.36, W.46
- Chain 3: W.29, L.32, V.33, A.36, H.37, A.40
- Ligands: CRT.99, BCL.100, BCL.107
12 PLIP interactions:2 interactions with chain 1, 4 interactions with chain 3, 5 interactions with chain 2, 1 interactions with chain 0,- Hydrophobic interactions: 1:F.30, 1:L.47, 3:W.29, 3:W.29, 3:A.36, 3:A.40, 2:Q.28, 2:W.46, 2:W.46, 2:W.46, 0:I.35
- Metal complexes: 2:H.36
BCL.107: 15 residues within 4Å:- Chain 2: Q.28, L.31, G.32, I.35, H.36
- Chain 3: F.30, V.33, H.37, W.41, W.46, L.47
- Chain 4: L.47
- Ligands: BCL.101, CRT.106, BCL.108
13 PLIP interactions:9 interactions with chain 3, 3 interactions with chain 2, 1 interactions with chain 4,- Hydrophobic interactions: 3:F.30, 3:H.37, 3:W.41, 3:W.41, 3:W.46, 3:W.46, 3:W.46, 3:L.47, 2:I.35, 2:I.35, 4:L.47
- Metal complexes: 3:H.37
- Hydrogen bonds: 2:Q.28
BCL.108: 16 residues within 4Å:- Chain 2: I.35
- Chain 3: L.47
- Chain 4: Q.28, I.29, G.32, H.36, W.46
- Chain 5: W.29, L.32, V.33, A.36, H.37, A.40
- Ligands: CRT.106, BCL.107, BCL.110
13 PLIP interactions:7 interactions with chain 4, 1 interactions with chain 2, 4 interactions with chain 5, 1 interactions with chain 3,- Hydrophobic interactions: 4:Q.28, 4:I.29, 4:W.46, 4:W.46, 4:W.46, 4:W.46, 2:I.35, 5:W.29, 5:W.29, 5:W.29, 5:A.40, 3:L.47
- Metal complexes: 4:H.36
BCL.110: 15 residues within 4Å:- Chain 4: Q.28, L.31, G.32, I.35, H.36
- Chain 5: F.30, V.33, V.34, H.37, W.41, W.46
- Chain 6: L.47
- Ligands: CRT.103, BCL.108, BCL.111
15 PLIP interactions:4 interactions with chain 4, 10 interactions with chain 5, 1 interactions with chain 6,- Hydrophobic interactions: 4:L.31, 4:I.35, 4:I.35, 5:F.30, 5:V.33, 5:V.34, 5:W.41, 5:W.41, 5:W.41, 5:W.46, 5:W.46, 5:W.46, 6:L.47
- Hydrogen bonds: 4:Q.28
- Metal complexes: 5:H.37
BCL.111: 19 residues within 4Å:- Chain 4: I.11, L.15, I.35
- Chain 6: L.21, V.25, Q.28, I.29, H.36, W.46
- Chain 7: W.29, L.32, V.33, A.36, H.37
- Ligands: UQ8.17, CRT.103, BCL.110, BCL.113, CRT.114
13 PLIP interactions:2 interactions with chain 7, 8 interactions with chain 6, 3 interactions with chain 4,- Hydrophobic interactions: 7:W.29, 7:A.36, 6:L.21, 6:V.25, 6:Q.28, 6:I.29, 6:W.46, 6:W.46, 6:W.46, 4:I.11, 4:L.15, 4:I.35
- Metal complexes: 6:H.36
BCL.113: 16 residues within 4Å:- Chain 6: Q.28, L.31, G.32, I.35, H.36, V.39, L.44
- Chain 7: F.30, V.33, H.37, W.46, L.47
- Chain 8: L.47
- Ligands: BCL.111, CRT.114, BCL.115
14 PLIP interactions:8 interactions with chain 7, 5 interactions with chain 6, 1 interactions with chain 8,- Hydrophobic interactions: 7:F.30, 7:V.33, 7:V.33, 7:W.46, 7:W.46, 7:W.46, 7:L.47, 6:L.31, 6:I.35, 6:V.39, 6:L.44, 8:L.47
- Metal complexes: 7:H.37
- Hydrogen bonds: 6:Q.28
BCL.115: 18 residues within 4Å:- Chain 6: I.24, I.35
- Chain 7: L.47
- Chain 8: V.25, Q.28, I.29, G.32, H.36, W.46, L.47
- Chain 9: W.29, L.32, V.33, A.36, H.37
- Ligands: BCL.113, CRT.114, BCL.117
15 PLIP interactions:9 interactions with chain 8, 1 interactions with chain 7, 3 interactions with chain 9, 2 interactions with chain 6,- Hydrophobic interactions: 8:V.25, 8:Q.28, 8:I.29, 8:I.29, 8:W.46, 8:W.46, 8:W.46, 8:W.46, 7:L.47, 9:W.29, 9:W.29, 9:A.36, 6:I.24, 6:I.35
- Metal complexes: 8:H.36
BCL.117: 15 residues within 4Å:- Chain 8: Q.28, L.31, G.32, I.35, H.36
- Chain 9: F.30, V.33, V.34, H.37, W.46, L.47
- Chain E: L.47
- Ligands: BCL.39, BCL.115, CRT.119
15 PLIP interactions:11 interactions with chain 9, 1 interactions with chain E, 3 interactions with chain 8,- Hydrophobic interactions: 9:F.30, 9:V.33, 9:V.34, 9:H.37, 9:W.46, 9:W.46, 9:W.46, 9:W.46, 9:W.46, 9:L.47, E:L.47, 8:I.35, 8:I.35
- Metal complexes: 9:H.37
- Hydrogen bonds: 8:Q.28
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.11: 33 residues within 4Å:- Chain B: F.42, T.43, G.46, V.47, I.98, A.102, F.106, W.109, E.113, V.126, A.129, F.130, F.132, A.133, Y.137, Y.157, G.158, I.159, F.189, A.246, A.250
- Chain C: Y.210, A.213, L.214, A.217, M.218, W.252, T.255, M.256
- Ligands: BCL.9, BCL.10, PGV.15, MQ8.23
20 PLIP interactions:17 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:T.43, B:V.47, B:I.98, B:A.102, B:A.129, B:F.130, B:F.130, B:F.132, B:A.133, B:Y.137, B:Y.157, B:Y.157, B:Y.157, B:I.159, B:F.189, B:A.250, C:Y.210, C:A.213, C:A.217
- pi-Stacking: B:F.130
BPH.21: 26 residues within 4Å:- Chain B: F.190, C.193, L.194, S.197, M.198, F.225, I.228, V.229
- Chain C: S.60, G.64, L.65, I.68, L.122, S.125, I.126, W.129, T.133, L.146, A.149, F.150, A.153, A.273, V.277
- Ligands: BCL.13, BCL.20, CDL.76
12 PLIP interactions:2 interactions with chain B, 10 interactions with chain C- Hydrophobic interactions: B:F.190, B:L.194, C:L.122, C:W.129, C:L.146, C:A.149, C:F.150, C:F.150, C:A.153, C:A.273, C:V.277
- pi-Stacking: C:F.150
- 5 x UQ8: Ubiquinone-8(Non-covalent)
UQ8.12: 20 residues within 4Å:- Chain B: S.187, F.188, T.191, M.198, H.199, L.202, I.203, E.221, N.222, F.225, Y.231, S.232, I.233, G.234, A.235, I.238, L.241, L.245
- Ligands: UQ8.19, PGV.30
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:F.188, B:M.198, B:F.225, B:F.225, B:I.233, B:I.238, B:I.238, B:L.241, B:L.241, B:L.245
- Hydrogen bonds: B:H.199, B:I.233, B:G.234
UQ8.17: 23 residues within 4Å:- Chain 4: W.12, I.24
- Chain 5: F.22, M.26
- Chain 6: V.25, A.26, I.29, M.37
- Chain B: V.38, L.84, R.85, W.95, Q.96, I.100, A.103, G.104, I.107, S.108, F.142, W.151
- Ligands: PGV.16, UQ8.18, BCL.111
12 PLIP interactions:3 interactions with chain 6, 6 interactions with chain B, 2 interactions with chain 4, 1 interactions with chain 5- Hydrophobic interactions: 6:V.25, 6:A.26, 6:I.29, B:I.100, B:I.107, B:I.107, 4:W.12, 4:I.24, 5:F.22
- Hydrogen bonds: B:Q.96
- pi-Stacking: B:W.151, B:W.151
UQ8.18: 20 residues within 4Å:- Chain 4: L.34
- Chain 6: S.23, A.26, F.27, V.30, L.33, L.34
- Chain 8: I.29, L.33
- Chain B: F.23, F.34, V.37, V.38, C.41, F.42, L.45, I.100, C.101
- Ligands: UQ8.17, PGV.105
12 PLIP interactions:3 interactions with chain B, 7 interactions with chain 6, 1 interactions with chain 8, 1 interactions with chain 4- Hydrophobic interactions: B:F.42, B:L.45, B:I.100, 6:F.27, 6:F.27, 6:L.33, 6:L.34, 6:L.34, 8:L.33, 4:L.34
- Hydrogen bonds: 6:F.27
- pi-Stacking: 6:F.27
UQ8.19: 10 residues within 4Å:- Chain B: P.180, M.183, L.184, S.187, W.272
- Chain C: F.91, I.179
- Ligands: PGV.8, UQ8.12, BCL.13
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:M.183, B:L.184
- Hydrogen bonds: B:S.187
UQ8.32: 10 residues within 4Å:- Chain C: L.65, V.66, S.69
- Chain S: V.30, L.33, L.34, M.37
- Ligands: CRT.24, CDL.76, CDL.81
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain S- Hydrophobic interactions: C:L.65, S:V.30
- Hydrogen bonds: C:S.69
- 1 x SO4: SULFATE ION(Non-functional Binders)
SO4.14: 4 residues within 4Å:- Chain B: L.276, E.277, W.281
- Chain C: K.88
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Salt bridges: C:K.88
- Hydrogen bonds: B:W.281
- 1 x FE: FE (III) ION(Non-covalent)
FE.22: 5 residues within 4Å:- Chain B: H.199, H.239
- Chain C: H.219, E.234, H.266
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Metal complexes: C:H.219, C:E.234, C:H.266, B:H.199, B:H.239
- 1 x MQ8: MENAQUINONE 8(Non-covalent)
MQ8.23: 26 residues within 4Å:- Chain B: F.30, F.40, L.44, W.109
- Chain C: L.214, L.215, M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, V.260, T.261, M.262, I.265, W.268
- Chain E: V.30
- Ligands: BCL.9, BCL.10, BPH.11, CDL.38, CDL.48
17 PLIP interactions:15 interactions with chain C, 1 interactions with chain B, 1 interactions with chain E- Hydrophobic interactions: C:L.214, C:L.215, C:M.218, C:A.248, C:A.249, C:W.252, C:F.258, C:F.258, C:V.260, C:V.260, C:I.265, C:W.268, C:W.268, C:W.268, B:F.40, E:V.30
- Hydrogen bonds: C:V.260
- 17 x CRT: SPIRILLOXANTHIN(Non-covalent)
CRT.24: 26 residues within 4Å:- Chain C: I.68, S.69, I.71, G.72, F.73, M.75, F.90, L.116, G.119, L.120, T.123, Y.157, G.161, F.162, W.171, V.175, F.177, G.178, I.179, H.182
- Chain O: L.34, I.38, S.41
- Ligands: BCL.13, BCL.20, UQ8.32
16 PLIP interactions:14 interactions with chain C, 2 interactions with chain O- Hydrophobic interactions: C:I.68, C:I.71, C:F.90, C:L.120, C:L.120, C:Y.157, C:Y.157, C:F.162, C:W.171, C:W.171, C:V.175, C:V.175, C:F.177, C:I.179, O:L.34, O:I.38
CRT.42: 24 residues within 4Å:- Chain E: K.10, I.11, I.14
- Chain G: L.21, I.24, F.27, Q.28, L.31, I.35
- Chain H: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30
- Chain I: L.33, H.36, M.37
- Ligands: BCL.46, BCL.50
18 PLIP interactions:9 interactions with chain H, 7 interactions with chain G, 2 interactions with chain E- Hydrophobic interactions: H:F.18, H:F.18, H:I.21, H:I.21, H:F.22, H:F.22, H:M.26, H:W.29, H:F.30, G:L.21, G:I.24, G:I.24, G:F.27, G:F.27, G:L.31, G:I.35, E:K.10, E:K.10
CRT.43: 20 residues within 4Å:- Chain 8: K.10, I.11, I.14
- Chain E: L.21, I.24, F.27, Q.28, L.31
- Chain F: F.18, I.21, F.22, S.25, M.26, F.30
- Chain G: I.29, L.33, H.36, M.37
- Ligands: BCL.41, BCL.44
14 PLIP interactions:3 interactions with chain 8, 5 interactions with chain F, 6 interactions with chain E- Hydrophobic interactions: 8:K.10, 8:K.10, 8:I.11, F:F.18, F:I.21, F:I.21, F:M.26, F:F.30, E:L.21, E:I.24, E:F.27, E:F.27, E:L.31, E:L.31
CRT.53: 23 residues within 4Å:- Chain G: K.10, I.11, I.14
- Chain I: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain J: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain K: L.33, H.36, M.37
- Ligands: BCL.52, BCL.54
18 PLIP interactions:5 interactions with chain I, 4 interactions with chain G, 9 interactions with chain J- Hydrophobic interactions: I:L.21, I:I.24, I:F.27, I:F.27, I:I.35, G:K.10, G:I.11, G:I.11, G:I.14, J:F.18, J:F.18, J:I.21, J:I.21, J:F.22, J:F.22, J:M.26, J:F.30, J:F.30
CRT.57: 23 residues within 4Å:- Chain I: K.10, I.11, I.14
- Chain K: L.21, I.24, F.27, Q.28, I.35, I.38
- Chain L: E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30
- Chain M: L.33, H.36, M.37
- Ligands: BCL.58, BCL.59
22 PLIP interactions:12 interactions with chain L, 6 interactions with chain K, 4 interactions with chain I- Hydrophobic interactions: L:E.17, L:F.18, L:F.18, L:I.21, L:I.21, L:F.22, L:F.22, L:F.22, L:M.26, L:W.29, L:F.30, L:F.30, K:L.21, K:L.21, K:I.24, K:F.27, K:I.35, K:I.38, I:K.10, I:K.10, I:I.11, I:I.14
CRT.63: 23 residues within 4Å:- Chain K: K.10, I.11, I.14
- Chain M: L.21, I.24, F.27, Q.28, L.31, I.38
- Chain N: E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30
- Chain O: L.33, H.36, M.37
- Ligands: BCL.61, BCL.64
18 PLIP interactions:6 interactions with chain M, 10 interactions with chain N, 2 interactions with chain K- Hydrophobic interactions: M:L.21, M:I.24, M:F.27, M:F.27, M:L.31, M:I.38, N:F.18, N:F.18, N:I.21, N:I.21, N:F.22, N:F.22, N:F.22, N:M.26, N:F.30, N:F.30, K:K.10, K:I.11
CRT.66: 24 residues within 4Å:- Chain O: L.8, K.10, I.11, I.14
- Chain Q: L.21, I.24, F.27, Q.28, L.31, I.35
- Chain R: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain S: I.29, L.33, H.36
- Ligands: BCL.72, BCL.73, CDL.76
17 PLIP interactions:8 interactions with chain R, 6 interactions with chain Q, 3 interactions with chain O- Hydrophobic interactions: R:F.18, R:F.18, R:I.21, R:I.21, R:F.22, R:F.22, R:M.26, R:F.30, Q:L.21, Q:I.24, Q:F.27, Q:F.27, Q:L.31, Q:I.35, O:L.8, O:K.10, O:I.11
CRT.68: 23 residues within 4Å:- Chain M: K.10, I.11, I.14
- Chain O: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain P: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain Q: L.33, H.36, M.37
- Ligands: BCL.69, BCL.70
19 PLIP interactions:6 interactions with chain O, 2 interactions with chain M, 11 interactions with chain P- Hydrophobic interactions: O:L.21, O:I.24, O:F.27, O:F.27, O:I.35, O:I.38, M:K.10, M:I.14, P:E.14, P:E.17, P:F.18, P:I.21, P:I.21, P:F.22, P:F.22, P:F.22, P:M.26, P:F.30, P:F.30
CRT.77: 27 residues within 4Å:- Chain Q: L.8, K.10, I.11, I.14
- Chain S: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain T: E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30
- Chain U: I.29, L.33, H.36, M.37
- Ligands: BCL.75, BCL.78, CDL.81
17 PLIP interactions:7 interactions with chain T, 6 interactions with chain S, 4 interactions with chain Q- Hydrophobic interactions: T:F.18, T:I.21, T:I.21, T:M.26, T:W.29, T:F.30, T:F.30, S:L.21, S:I.24, S:F.27, S:F.27, S:L.31, S:I.35, Q:K.10, Q:K.10, Q:I.11, Q:I.11
CRT.82: 24 residues within 4Å:- Chain C: F.84
- Chain S: N.7, K.10, I.11, I.14
- Chain U: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain V: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain W: L.33, H.36
- Ligands: BCL.80, BCL.83
20 PLIP interactions:7 interactions with chain U, 4 interactions with chain S, 9 interactions with chain V- Hydrophobic interactions: U:L.21, U:I.24, U:F.27, U:F.27, U:L.31, U:L.31, U:I.35, S:K.10, S:I.11, S:I.11, S:I.14, V:E.14, V:E.17, V:F.18, V:I.21, V:I.21, V:F.22, V:M.26, V:F.30, V:F.30
CRT.84: 23 residues within 4Å:- Chain U: K.10, I.11, I.14
- Chain W: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain X: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain Y: L.33, H.36, M.37
- Ligands: BCL.86, BCL.89
16 PLIP interactions:5 interactions with chain W, 2 interactions with chain U, 1 interactions with chain Y, 8 interactions with chain X- Hydrophobic interactions: W:L.21, W:I.24, W:F.27, W:F.27, W:I.35, U:K.10, U:I.11, Y:H.36, X:F.18, X:I.21, X:I.21, X:F.22, X:F.22, X:F.22, X:M.26, X:F.30
CRT.93: 21 residues within 4Å:- Chain 0: L.33, H.36
- Chain W: K.10, I.11, I.14
- Chain Y: L.21, I.24, F.27, Q.28, L.31, I.35
- Chain Z: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Ligands: BCL.91, BCL.94
16 PLIP interactions:5 interactions with chain Y, 9 interactions with chain Z, 2 interactions with chain W- Hydrophobic interactions: Y:L.21, Y:I.24, Y:F.27, Y:F.27, Y:I.35, Z:E.17, Z:F.18, Z:I.21, Z:I.21, Z:F.22, Z:F.22, Z:F.22, Z:M.26, Z:F.30, W:I.11, W:I.14
CRT.99: 23 residues within 4Å:- Chain 0: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain 1: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain 2: L.33, H.36
- Chain Y: K.10, I.11, I.14
- Ligands: BCL.100, BCL.101
16 PLIP interactions:2 interactions with chain Y, 5 interactions with chain 0, 9 interactions with chain 1- Hydrophobic interactions: Y:K.10, Y:I.11, 0:L.21, 0:I.24, 0:I.24, 0:F.27, 0:I.35, 1:E.14, 1:E.17, 1:F.18, 1:I.21, 1:I.21, 1:F.22, 1:F.22, 1:M.26, 1:F.30
CRT.103: 25 residues within 4Å:- Chain 2: K.10, I.11, I.14
- Chain 4: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain 5: E.14, E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30
- Chain 6: I.29, L.33, H.36, M.37
- Ligands: BCL.110, BCL.111
19 PLIP interactions:7 interactions with chain 4, 7 interactions with chain 5, 4 interactions with chain 2, 1 interactions with chain 6- Hydrophobic interactions: 4:L.21, 4:I.24, 4:F.27, 4:F.27, 4:L.31, 4:L.31, 4:I.35, 5:F.18, 5:I.21, 5:I.21, 5:M.26, 5:W.29, 5:F.30, 5:F.30, 2:K.10, 2:I.11, 2:I.11, 2:I.14, 6:I.29
CRT.106: 23 residues within 4Å:- Chain 0: K.10, I.11, L.13, I.14
- Chain 2: L.21, I.24, F.27, Q.28, L.31
- Chain 3: L.10, E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain 4: L.33, H.36
- Ligands: PGV.105, BCL.107, BCL.108
20 PLIP interactions:6 interactions with chain 2, 11 interactions with chain 3, 3 interactions with chain 0- Hydrophobic interactions: 2:L.21, 2:I.24, 2:I.24, 2:F.27, 2:F.27, 2:L.31, 3:E.14, 3:F.18, 3:F.18, 3:I.21, 3:I.21, 3:F.22, 3:F.22, 3:F.22, 3:M.26, 3:F.30, 3:F.30, 0:I.11, 0:I.11, 0:L.13
CRT.114: 25 residues within 4Å:- Chain 4: N.7, L.8, K.10, I.11
- Chain 6: L.21, I.24, F.27, Q.28, L.31, I.35, I.38
- Chain 7: E.17, F.18, I.21, F.22, S.25, M.26, W.29, F.30
- Chain 8: L.33, H.36, M.37
- Ligands: BCL.111, BCL.113, BCL.115
15 PLIP interactions:8 interactions with chain 7, 4 interactions with chain 6, 3 interactions with chain 4- Hydrophobic interactions: 7:F.18, 7:I.21, 7:I.21, 7:F.22, 7:F.22, 7:M.26, 7:W.29, 7:F.30, 6:L.21, 6:I.24, 6:F.27, 6:I.35, 4:L.8, 4:K.10, 4:I.11
CRT.119: 23 residues within 4Å:- Chain 6: K.10, I.11, I.14
- Chain 8: L.21, I.24, F.27, Q.28, L.31, I.35
- Chain 9: E.14, E.17, F.18, I.21, F.22, S.25, M.26, F.30
- Chain E: I.29, L.33, H.36, M.37
- Ligands: BCL.39, BCL.117
12 PLIP interactions:6 interactions with chain 9, 5 interactions with chain 8, 1 interactions with chain E- Hydrophobic interactions: 9:E.17, 9:I.21, 9:I.21, 9:F.22, 9:M.26, 9:F.30, 8:L.21, 8:I.24, 8:F.27, 8:L.31, 8:I.35, E:I.29
- 10 x CDL: CARDIOLIPIN(Non-covalent)(Covalent)
CDL.25: 30 residues within 4Å:- Chain B: N.208, P.209
- Chain C: L.127, W.130, Y.134, S.143, Q.144, H.145, W.148, A.151, I.154, F.155, L.158, I.163, R.267, W.270, W.271, I.278, I.282
- Chain D: A.18, L.21, F.22, F.24, G.25, L.26, Y.29
- Chain I: V.30
- Chain M: R.19
- Ligands: LMT.33, CDL.67
26 PLIP interactions:18 interactions with chain C, 6 interactions with chain D, 1 interactions with chain B, 1 interactions with chain I- Hydrophobic interactions: C:L.127, C:W.130, C:W.130, C:Y.134, C:W.148, C:A.151, C:I.154, C:F.155, C:I.163, C:W.270, C:W.271, C:W.271, C:I.278, C:I.278, C:I.282, D:F.22, D:F.22, D:F.22, D:F.22, D:F.24, D:Y.29, I:V.30
- Hydrogen bonds: C:S.143, B:P.209
- Salt bridges: C:H.145, C:R.267
CDL.31: 11 residues within 4Å:- Chain C: Y.4, Q.5, N.6, I.7, F.8, A.10, W.39, K.42, I.43
- Chain D: K.204
- Ligands: PGV.29
13 PLIP interactions:12 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:F.8, C:F.8, C:F.8, C:W.39, C:K.42, C:I.43
- Hydrogen bonds: C:Q.5, C:N.6, C:I.7, C:F.8
- Salt bridges: C:K.42, C:K.42, D:K.204
CDL.38: 27 residues within 4Å:- Chain B: A.2, V.27, F.30, W.109
- Chain C: A.207, F.208, M.256, G.257, F.258, W.268, C.272
- Chain D: F.23, R.31, K.35, Y.39, L.41, V.55, V.56, G.57, F.58
- Chain E: R.19
- Ligands: BCL.9, BCL.10, MQ8.23, PGV.36, CDL.48, PGV.118
21 PLIP interactions:7 interactions with chain D, 7 interactions with chain B, 1 interactions with chain E, 6 interactions with chain C- Hydrophobic interactions: D:F.23, B:V.27, B:F.30, B:F.30, B:F.30, B:W.109, C:A.207, C:F.258, C:F.258, C:W.268, C:W.268
- Hydrogen bonds: D:Y.39, D:V.56, D:F.58, B:A.2, B:A.2, C:R.253
- Salt bridges: D:R.31, D:R.31, D:K.35, E:R.19
CDL.47: 15 residues within 4Å:- Chain D: R.32, F.58, D.60
- Chain G: I.14, L.15, D.16, R.19, V.20, S.23
- Chain I: R.19, V.22, S.23, V.25, A.26
- Ligands: CDL.48
10 PLIP interactions:4 interactions with chain G, 2 interactions with chain D, 4 interactions with chain I- Hydrogen bonds: G:I.14, G:D.16, I:S.23
- Salt bridges: G:R.19, G:R.19
- Hydrophobic interactions: D:F.58, D:F.58, I:V.22, I:V.25, I:A.26
CDL.48: 24 residues within 4Å:- Chain D: I.27, R.45, K.54, V.55, V.56, G.57, F.58
- Chain E: L.15, D.16, R.19, V.20, S.23, V.30
- Chain G: R.18, R.19, V.22, S.23, V.25, I.29, L.33
- Ligands: MQ8.23, CDL.38, CDL.47, PGV.118
21 PLIP interactions:8 interactions with chain D, 7 interactions with chain G, 6 interactions with chain E- Hydrophobic interactions: D:I.27, D:F.58, D:F.58, G:V.25, G:I.29, G:I.29, E:V.30
- Hydrogen bonds: D:K.54, D:V.56, D:G.57, D:F.58, E:D.16, E:R.19, E:R.19, E:S.23
- Salt bridges: D:R.45, G:R.18, G:R.18, G:R.19, G:R.19, E:R.19
CDL.67: 26 residues within 4Å:- Chain C: L.59, L.128, W.130, V.131, Y.134, K.135, E.138
- Chain M: L.15, D.16, V.20, S.23, F.27, V.30
- Chain O: R.18, R.19, V.22, S.23, V.25, A.26, F.27, I.29, V.30, L.33
- Chain Q: I.29, L.33
- Ligands: CDL.25
24 PLIP interactions:11 interactions with chain O, 4 interactions with chain M, 7 interactions with chain C, 2 interactions with chain Q- Hydrophobic interactions: O:V.25, O:A.26, O:F.27, O:F.27, O:F.27, O:F.27, O:I.29, O:V.30, O:L.33, M:F.27, M:V.30, C:L.59, C:L.128, C:W.130, C:V.131, C:V.131, Q:I.29, Q:L.33
- Hydrogen bonds: O:R.18, M:D.16, M:S.23
- Salt bridges: O:R.19, C:K.135, C:K.135
CDL.76: 31 residues within 4Å:- Chain C: I.31, G.32, R.33, I.51, I.61, F.62, L.65, V.66, W.129
- Chain Q: I.14, L.15, D.16, R.19, V.20, S.23, I.24, F.27, V.30
- Chain S: R.18, R.19, V.22, S.23, V.25, A.26, I.29
- Ligands: BPH.21, PGV.30, UQ8.32, CRT.66, BCL.73, CDL.81
29 PLIP interactions:8 interactions with chain Q, 11 interactions with chain C, 10 interactions with chain S- Hydrophobic interactions: Q:I.24, Q:F.27, Q:V.30, C:I.31, C:I.51, C:I.61, C:F.62, C:F.62, C:F.62, C:L.65, C:V.66, C:W.129, S:V.22, S:A.26, S:A.26, S:I.29, S:I.29
- Hydrogen bonds: Q:D.16, Q:D.16, Q:D.16, Q:S.23, C:G.32, C:R.33
- Salt bridges: Q:R.19, S:R.18, S:R.18, S:R.19, S:R.19, S:R.19
CDL.81: 21 residues within 4Å:- Chain S: L.15, D.16, R.19, V.20, S.23, I.24, V.30
- Chain U: R.18, R.19, V.22, S.23, V.25, A.26, F.27, I.29, L.33
- Ligands: PGV.30, UQ8.32, CDL.76, CRT.77, BCL.78
10 PLIP interactions:7 interactions with chain U, 3 interactions with chain S- Hydrophobic interactions: U:V.22, U:V.25, U:L.33, S:V.30
- Hydrogen bonds: U:R.18, U:R.18, S:D.16, S:S.23
- Salt bridges: U:R.19, U:R.19
CDL.92: 13 residues within 4Å:- Chain W: L.15, D.16, R.19, V.20, S.23
- Chain Y: R.18, R.19, V.22, S.23, V.25, A.26
- Ligands: PEF.26, BCL.94
9 PLIP interactions:1 interactions with chain W, 8 interactions with chain Y- Hydrogen bonds: W:D.16, Y:R.18, Y:R.18, Y:R.19, Y:R.19
- Hydrophobic interactions: Y:V.25, Y:A.26
- Salt bridges: Y:R.18, Y:R.19
CDL.97: 7 residues within 4Å:- Chain 0: R.18
- Chain Y: I.14, L.15, D.16, V.20, S.23
- Ligands: BCL.94
5 PLIP interactions:3 interactions with chain Y, 2 interactions with chain 0- Hydrogen bonds: Y:I.14, Y:D.16, Y:S.23, 0:R.18
- Salt bridges: 0:R.18
- 10 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)
PEF.26: 2 residues within 4Å:- Chain C: W.39
- Ligands: CDL.92
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.39
PEF.27: 3 residues within 4Å:- Chain C: S.37, Y.38, W.39
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.38, C:W.39
PEF.28: 6 residues within 4Å:- Chain C: Y.52, G.54, L.55, T.56, K.135, R.136
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:Y.52, C:L.55, C:T.56, C:T.56, C:R.136
- Salt bridges: C:K.135
PEF.35: 2 residues within 4Å:- Chain D: E.253
- Ligands: PEF.104
No protein-ligand interaction detected (PLIP)PEF.56: 2 residues within 4Å:- Chain K: L.15, D.16
1 PLIP interactions:1 interactions with chain K- Hydrogen bonds: K:D.16
PEF.62: 10 residues within 4Å:- Chain C: M.167, L.285
- Chain K: L.34, I.38
- Chain M: M.37, L.40, S.41, N.45, D.48
- Ligands: LMT.33
5 PLIP interactions:2 interactions with chain K, 2 interactions with chain M, 1 interactions with chain C- Hydrophobic interactions: K:L.34, K:I.38, C:L.285
- Hydrogen bonds: M:N.45, M:D.48
PEF.87: 6 residues within 4Å:- Chain U: L.15, D.16, R.19
- Chain W: R.18, V.22
- Ligands: PEF.88
4 PLIP interactions:2 interactions with chain U, 2 interactions with chain W- Hydrogen bonds: U:I.14, U:D.16, W:R.18
- Salt bridges: W:R.19
PEF.88: 3 residues within 4Å:- Chain U: R.19
- Chain W: R.19
- Ligands: PEF.87
2 PLIP interactions:1 interactions with chain U, 1 interactions with chain W- Salt bridges: U:R.19, W:R.19
PEF.96: 5 residues within 4Å:- Chain 0: L.15, D.16, R.19
- Chain 2: R.18, V.22
3 PLIP interactions:2 interactions with chain 0, 1 interactions with chain 2- Hydrogen bonds: 0:D.16
- Salt bridges: 0:R.19, 2:R.18
PEF.104: 4 residues within 4Å:- Chain 2: I.14, L.15, D.16
- Ligands: PEF.35
1 PLIP interactions:1 interactions with chain 2- Hydrogen bonds: 2:D.16
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
LMT.33: 10 residues within 4Å:- Chain A: G.198
- Chain C: M.167, M.168, I.282, L.286, T.289, V.290
- Chain D: T.15
- Ligands: CDL.25, PEF.62
7 PLIP interactions:5 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: C:I.282, C:L.286, C:V.290, D:T.15
- Hydrogen bonds: C:M.167, C:M.167, A:N.200
LMT.37: 16 residues within 4Å:- Chain C: K.300, H.301, G.302
- Chain D: Y.8, Q.13, W.17, A.18
- Chain I: L.34, M.37, I.38, L.40, S.41, N.45
- Chain K: M.37
- Ligands: PGV.36, PGV.49
9 PLIP interactions:3 interactions with chain D, 6 interactions with chain I- Hydrophobic interactions: D:W.17, D:W.17, D:A.18, I:L.34, I:L.34, I:M.37, I:I.38, I:I.38
- Hydrogen bonds: I:N.45
- 1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.120: 10 residues within 4Å:- Chain a: Y.19, C.43, C.46, F.48, M.49, C.61, L.63, F.64, I.69, C.75
4 PLIP interactions:4 interactions with chain a,- Metal complexes: a:C.43, a:C.46, a:C.61, a:C.75
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawakami, T. et al., Crystal structure of a photosynthetic LH1-RC in complex with its electron donor HiPIP. Nat Commun (2021)
- Release Date
- 2021-03-03
- Peptides
- Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
LH1 alpha polypeptide: EGIKMOQSUWY02468
LH1 beta polypeptide: FHJLNPRTVXZ13579
High-potential iron-sulfur protein: a - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
LC
MD
HE
AG
DI
FK
IM
KO
OQ
QS
SU
UW
WY
Y0
12
34
56
78
9F
BH
EJ
GL
JN
NP
PR
RT
TV
VX
XZ
Z1
23
45
67
89
0a
b - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.89 Å
- Oligo State
- hetero-1-1-1-1-16-16-1-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 17 x CA: CALCIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Covalent)
- 10 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Covalent)(Non-covalent)
- 36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- 2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
- 5 x UQ8: Ubiquinone-8(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- 1 x FE: FE (III) ION(Non-covalent)
- 1 x MQ8: MENAQUINONE 8(Non-covalent)
- 17 x CRT: SPIRILLOXANTHIN(Non-covalent)
- 10 x CDL: CARDIOLIPIN(Non-covalent)(Covalent)
- 10 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)
- 2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawakami, T. et al., Crystal structure of a photosynthetic LH1-RC in complex with its electron donor HiPIP. Nat Commun (2021)
- Release Date
- 2021-03-03
- Peptides
- Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
LH1 alpha polypeptide: EGIKMOQSUWY02468
LH1 beta polypeptide: FHJLNPRTVXZ13579
High-potential iron-sulfur protein: a - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
LC
MD
HE
AG
DI
FK
IM
KO
OQ
QS
SU
UW
WY
Y0
12
34
56
78
9F
BH
EJ
GL
JN
NP
PR
RT
TV
VX
XZ
Z1
23
45
67
89
0a
b - Membrane
-
We predict this structure to be a membrane protein.