SMTL ID : 7cit.1

Crystal structure of tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the solution containing Cu(II) and hydroxylamine for 24 h

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)

PEO.1: 10 residues within 4Å: Chain A: H.38, H.54, F.59, H.63, H.190, H.194, H.216 Chain B: Y.98 Ligands: CU.2, CU.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.182, A:E.182

5 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain A: H.38, H.54, H.63 Ligands: PEO.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.38, A:H.54, A:H.63, H2O.1 CU.3: 6 residues within 4Å: Chain A: H.190, H.194, F.212, H.216 Chain B: Y.98 Ligands: PEO.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.190, A:H.194, A:H.216, H2O.1 CU.4: 1 residues within 4Å: Chain A: H.277 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.277, H2O.7 CU.5: 3 residues within 4Å: Chain A: E.175, H.180, G.186 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.180 CU.10: 6 residues within 4Å: Chain A: I.42, M.43 Chain B: H.82, M.84, H.97 Ligands: NO3.11 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.82, B:H.97

6 x NO3: NITRATE ION(Non-functional Binders)

NO3.6: 8 residues within 4Å: Chain A: R.132, V.133, D.134, R.140, Q.200, T.203, V.205 Chain B: V.95 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.133, A:D.134, A:R.140, A:T.203 Water bridges: A:D.134, A:Q.200 NO3.7: 7 residues within 4Å: Chain A: Y.165, W.223, W.226, Q.227, A.234, Y.235, L.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.227, A:Y.235 NO3.8: 5 residues within 4Å: Chain A: T.238, G.239, D.246, L.247, N.248 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.247, A:N.248, A:N.248 NO3.9: 5 residues within 4Å: Chain A: R.228, H.265, T.270, F.271, L.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.228, A:H.265, A:F.271 NO3.11: 10 residues within 4Å: Chain A: I.42, M.43 Chain B: H.82, V.83, M.84, I.92, S.93, V.94, H.97 Ligands: CU.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.97 NO3.12: 4 residues within 4Å: Chain B: T.103, R.105, A.106, R.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.103, B:R.105, B:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matoba, Y. et al., The basicity of an active-site water molecule discriminates between tyrosinase and catechol oxidase activity. Int.J.Biol.Macromol. (2021)

Release Date

2021-06-16

Peptides

Tyrosinase: A
MelC: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosinase

MelC

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