SMTL ID : 7cjg.2 (1 other biounit)

Structural and kinetic characterization of Porphyromonas gingivalis glutaminyl cyclase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x DMD: 5,6-DIMETHYLBENZIMIDAZOLE(Non-covalent)

DMD.1: 15 residues within 4Å: Chain A: H.124, D.149, E.182, D.183, W.193, D.218, M.219, L.265, T.266, D.267, I.284, F.294, W.298, H.299 Ligands: ZN.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.193, A:F.294 Hydrogen bonds: A:D.218, A:W.298

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 5 residues within 4Å: Chain A: A.237, P.238, G.239, L.240, P.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.239, A:L.240

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.55, N.58, F.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.55, A:R.55, A:N.58

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 6 residues within 4Å: Chain A: D.42, F.44, S.45, A.46, D.314, E.318 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.42, A:F.44, A:D.314, A:E.318, H2O.1, H2O.2

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 6 residues within 4Å: Chain A: D.149, D.183, W.193, W.298, H.299 Ligands: DMD.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.149, A:D.183, A:D.183, A:H.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamers, S. et al., Structural and kinetic characterization of Porphyromonas gingivalis glutaminyl cyclase. Biol.Chem. (2021)

Release Date

2021-05-05

Peptides

Glutamine cyclotransferase-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Glutamine cyclotransferase-related protein

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