SMTL ID : 7ckl.1

Structure of Lassa virus polymerase bound to Z matrix protein

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.1192, D.1334, E.1384 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1192, A:D.1192, A:D.1334, A:E.1384, A:E.1384

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain B: C.31, S.33, C.34, C.50, C.53 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.31, B:C.34, B:C.50, B:C.53 ZN.3: 5 residues within 4Å: Chain B: C.44, H.47, L.49, C.64, C.67 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.44, B:H.47, B:C.64, B:C.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Cryo-EM structures of Lassa and Machupo virus polymerases complexed with cognate regulatory Z proteins identify targets for antivirals. Nat Microbiol (2021)

Release Date

2021-05-05

Peptides

RNA-directed RNA polymerase L: A
RING finger protein Z: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-directed RNA polymerase L

RING finger protein Z

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