SMTL ID : 7cny.1

Crystal structure of 8PE bound PSD from E. coli (2.12 A)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

hetero-2-2-mer

Ligands

2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 6 residues within 4Å: Chain A: W.17, P.220, R.221 Chain C: Y.11, P.176, R.181 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:R.181, C:R.181, A:R.221 Water bridges: A:R.20 LMT.2: 10 residues within 4Å: Chain A: A.22, W.24, G.25, A.26, K.28, R.29, A.30, L.33, V.37, F.63 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.24, A:A.30, A:V.37, A:F.63 Hydrogen bonds: A:R.29

2 x G8C: 1,2-Dioctanoyl-SN-Glycero-3-Phosphoethanolamine(Covalent)

G8C.3: 11 residues within 4Å: Chain A: F.41, Y.137, L.138, S.166, V.167, A.203, T.204, I.205, V.206 Chain B: X.1, T.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.41, A:V.206 Hydrogen bonds: A:Y.137, A:L.138, A:V.167, A:T.204 G8C.4: 13 residues within 4Å: Chain C: F.41, Y.45, Y.137, L.138, S.166, V.167, A.203, T.204, I.205, V.206, L.252 Chain D: X.1, T.2 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.41, C:L.252 Hydrogen bonds: C:Y.137, C:L.138, C:S.166, C:V.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, G. et al., Structural insights into phosphatidylethanolamine formation in bacterial membrane biogenesis. Sci Rep (2021)

Release Date

2021-03-24

Peptides

Phosphatidylserine decarboxylase beta chain: AC
Phosphatidylserine decarboxylase alpha chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Phosphatidylserine decarboxylase beta chain

Phosphatidylserine decarboxylase alpha chain

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