- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GEK: (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: W.106, Y.201, A.245, M.247, Q.284, Y.298
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.201, A:Q.284, A:Q.284
SO4.4: 7 residues within 4Å:- Chain B: W.106, A.245, M.247, Q.284, Y.298, P.314
- Ligands: GEK.3
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.284, B:Q.284
SO4.6: 6 residues within 4Å:- Chain C: W.106, Y.201, A.245, M.247, Q.284, Y.298
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.284, C:Q.284
SO4.8: 7 residues within 4Å:- Chain D: W.106, A.245, M.247, Q.284, Y.298, P.314
- Ligands: GEK.7
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.284, D:Q.284
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeong, S. et al., Structural snapshots of CmoB in various states during wobble uridine modification of tRNA. Biochem.Biophys.Res.Commun. (2021)
- Release Date
- 2021-03-03
- Peptides
- tRNA U34 carboxymethyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GEK: (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jeong, S. et al., Structural snapshots of CmoB in various states during wobble uridine modification of tRNA. Biochem.Biophys.Res.Commun. (2021)
- Release Date
- 2021-03-03
- Peptides
- tRNA U34 carboxymethyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B