- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 38 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 5 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
PTY.13: 13 residues within 4Å:- Chain A: I.27, P.30, L.31, N.301, D.304, L.388
- Chain B: L.449, A.453, F.460, T.878, I.881, L.889
- Ligands: LMT.5
14 PLIP interactions:7 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:I.27, A:L.31, A:L.388, B:F.460, B:F.460, B:F.460, B:F.460, B:T.878, B:I.881, B:L.889
- Hydrogen bonds: A:P.30, A:D.304, A:D.304
- Water bridges: A:N.301
PTY.31: 5 residues within 4Å:- Chain B: V.887, F.891, W.901, V.1038
- Ligands: LMT.1
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.887, B:F.891, B:F.891, B:F.891, B:W.901, B:W.901, B:W.901
PTY.32: 14 residues within 4Å:- Chain B: I.27, P.30, L.31, G.299, Y.387, L.388
- Chain C: A.453, V.456, F.460, T.878, I.881, L.889, V.893
- Ligands: LMT.23
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:V.456, C:F.460, C:F.460, C:F.460, C:F.460, C:I.881, C:L.889, C:V.893, B:I.27, B:L.31
- Hydrogen bonds: B:P.30
- Water bridges: B:P.30
PTY.54: 8 residues within 4Å:- Chain A: L.888, W.901
- Chain C: I.19, I.23, I.373, L.497, L.498
- Ligands: LMT.42
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain C- Hydrophobic interactions: A:L.888, A:W.901, C:I.19, C:I.23, C:I.373, C:L.498
PTY.55: 10 residues within 4Å:- Chain A: V.456, P.457, F.460, T.878
- Chain C: P.30, L.31, N.301, S.384, Y.387, L.388
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: C:L.31, C:Y.387, A:V.456, A:P.457, A:F.460, A:T.878
- Hydrogen bonds: C:N.301
- Water bridges: C:N.301, C:N.301
- 17 x GOL: GLYCEROL(Non-functional Binders)
GOL.14: 5 residues within 4Å:- Chain A: R.310, W.326, A.327, A.328, Y.614
Ligand excluded by PLIPGOL.15: 2 residues within 4Å:- Chain A: F.145, N.285
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain A: L.162, D.166, R.771
- Chain B: G.825, Y.826
Ligand excluded by PLIPGOL.17: 3 residues within 4Å:- Chain A: E.246, R.266, I.271
Ligand excluded by PLIPGOL.33: 6 residues within 4Å:- Chain B: S.900, T.902, L.903, L.1034, R.1035, V.1038
Ligand excluded by PLIPGOL.34: 3 residues within 4Å:- Chain B: K.585, F.667, I.721
Ligand excluded by PLIPGOL.35: 9 residues within 4Å:- Chain B: V.584, K.585, L.621, N.622, A.623, T.632, G.633, T.634, F.669
Ligand excluded by PLIPGOL.36: 6 residues within 4Å:- Chain B: E.36, P.136, T.137, L.138, P.332, L.677
Ligand excluded by PLIPGOL.37: 5 residues within 4Å:- Chain B: R.421, E.439, F.954, E.957, L.975
Ligand excluded by PLIPGOL.38: 11 residues within 4Å:- Chain B: P.33, V.34, S.35, Y.37, P.38, D.39, Q.296, P.298, A.300, S.392
- Ligands: LMT.27
Ligand excluded by PLIPGOL.39: 9 residues within 4Å:- Chain B: E.50, D.87, V.89, G.276, S.277, A.279, N.628, R.774
- Ligands: GOL.40
Ligand excluded by PLIPGOL.40: 9 residues within 4Å:- Chain B: R.157, S.182, G.183, E.184, G.276, S.277, R.774
- Ligands: LMT.22, GOL.39
Ligand excluded by PLIPGOL.56: 5 residues within 4Å:- Chain C: A.203, S.204, V.207, G.752, T.756
Ligand excluded by PLIPGOL.57: 12 residues within 4Å:- Chain C: K.81, L.624, Q.625, S.686, L.687, Y.688, D.830, L.831, I.832, T.866, D.867
- Ligands: LMT.44
Ligand excluded by PLIPGOL.58: 5 residues within 4Å:- Chain C: G.698, Q.701, S.702, N.705, N.727
Ligand excluded by PLIPGOL.59: 8 residues within 4Å:- Chain A: A.118, R.119, L.120
- Chain C: Q.216, R.242, Y.762, N.764, D.765
Ligand excluded by PLIPGOL.60: 5 residues within 4Å:- Chain C: E.439, F.954, E.957, L.958, Q.961
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bharatham, N. et al., Structure and function relationship of OqxB efflux pump from Klebsiella pneumoniae. Nat Commun (2021)
- Release Date
- 2021-09-22
- Peptides
- Efflux pump membrane transporter: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 38 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 5 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
- 17 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bharatham, N. et al., Structure and function relationship of OqxB efflux pump from Klebsiella pneumoniae. Nat Commun (2021)
- Release Date
- 2021-09-22
- Peptides
- Efflux pump membrane transporter: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F - Membrane
-
We predict this structure to be a membrane protein.