SMTL ID : 7e4b.1

Crystal structure of MIF bound to compound 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-trimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: P.1, S.63, I.64 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: M.101, N.102, N.105 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: M.101, N.102, N.105 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain C: P.1, K.32, S.63, I.64 Ligand excluded by PLIP

1 x MRI: 2-[2,4-bis(oxidanyl)phenyl]-3,5,7-tris(oxidanyl)chromen-4-one(Non-covalent)

MRI.4: 13 residues within 4Å: Chain A: Y.95, N.97 Chain B: P.1, M.2, Y.36, H.62, S.63, I.64, M.101, V.106, W.108, T.112, F.113 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:H.62, B:V.106, B:W.108, B:W.108, B:F.113, A:Y.95 Hydrogen bonds: B:P.1, B:I.64, A:Y.95, A:N.97, A:N.97 Water bridges: B:S.63, B:I.64 pi-Stacking: B:W.108, B:F.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, L. et al., Identification and Structure-Activity Relationships of Dietary Flavonoids as Human Macrophage Migration Inhibitory Factor (MIF) Inhibitors. J.Agric.Food Chem. (2021)

Release Date

2023-02-15

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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