SMTL ID : 7erk.1

Crystal structure of V30M-TTR in complex with dasatinib

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x 1N1: N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE(Non-covalent)

1N1.1: 19 residues within 4Å: Chain A: K.47, L.49, E.86, H.88, T.138, A.140, A.141, L.142, S.149, T.151, V.153 Chain C: K.47, L.49, A.140, A.141, L.142, S.149, T.151 Ligands: 1N1.3 11 PLIP interactions: 9 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:K.47, A:T.138, A:A.140, A:L.142, A:L.142, A:T.151, A:V.153 Hydrogen bonds: A:E.86, C:K.47 Salt bridges: A:E.86 pi-Cation interactions: C:K.47 1N1.2: 14 residues within 4Å: Chain B: K.47, L.49, E.86, A.140, A.141, L.142, S.149 Chain D: L.49, T.138, A.140, L.142, S.149, T.151 Ligands: 1N1.4 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain B Hydrophobic interactions: D:T.138, D:A.140, D:L.142, D:L.142, B:K.47, B:L.142 Hydrogen bonds: B:K.47 Salt bridges: B:E.86 pi-Cation interactions: B:K.47 1N1.3: 19 residues within 4Å: Chain A: K.47, L.49, A.140, A.141, L.142, S.149, T.151 Chain C: K.47, L.49, E.86, H.88, T.138, A.140, A.141, L.142, S.149, T.151, V.153 Ligands: 1N1.1 11 PLIP interactions: 9 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:K.47, C:T.138, C:A.140, C:L.142, C:L.142, C:T.151, C:V.153 Hydrogen bonds: C:E.86, A:K.47 Salt bridges: C:E.86 pi-Cation interactions: A:K.47 1N1.4: 14 residues within 4Å: Chain B: L.49, T.138, A.140, L.142, S.149, T.151 Chain D: K.47, L.49, E.86, A.140, A.141, L.142, S.149 Ligands: 1N1.2 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:T.138, B:A.140, B:L.142, B:L.142, D:K.47, D:L.142 Hydrogen bonds: D:K.47 Salt bridges: D:E.86 pi-Cation interactions: D:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Repositioning of the Anthelmintic Drugs Bithionol and Triclabendazole as Transthyretin Amyloidogenesis Inhibitors. J.Med.Chem. (2021)

Release Date

2021-11-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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