SMTL ID : 7f0l.1

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOBACTER SPHAEROIDES MONOMER

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-14-14-1-1-mer

Ligands

32 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 29 residues within 4Å: Chain A: F.98, A.125, I.126, A.128, Y.129, L.132, W.157, V.158, S.159, T.161, N.167, F.168, H.169, H.174, A.177, I.178, F.181, F.182, S.245, A.246, C.248, M.249 Chain B: Y.211 Ligands: BPH.2, BCL.8, BCL.9, BCL.14, U10.17, PGV.26 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:F.98, A:F.98, A:A.125, A:A.128, A:Y.129, A:V.158, A:T.161, A:F.168, A:A.177, A:I.178, A:I.178, A:I.178, A:F.181, A:F.182, B:Y.211 Hydrogen bonds: A:S.245 Metal complexes: A:H.174 BCL.8: 22 residues within 4Å: Chain A: I.47, I.50, Y.129, L.132, F.147, I.151, W.152, H.154, L.155, V.158 Chain B: F.198, G.204, I.207, A.208, Y.211, G.212, L.215 Ligands: BCL.1, BPH.2, PGV.12, BCL.14, U10.17 13 PLIP interactions: 8 interactions with chain A, 5 interactions with chain B, Hydrophobic interactions: A:I.50, A:Y.129, A:L.132, A:F.147, A:I.151, A:L.155, A:V.158, B:F.198, B:I.207, B:I.207, B:L.215 Metal complexes: A:H.154 pi-Stacking: B:Y.211 BCL.9: 21 residues within 4Å: Chain A: H.169, M.175, I.178, T.179, F.182, T.183, L.186 Chain B: F.68, M.123, W.158, L.161, V.176, I.180, H.183, L.184, T.187 Ligands: BCL.1, U10.4, BCL.14, BPH.15, SPO.18 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A, Hydrophobic interactions: B:F.68, B:L.161, B:V.176, B:I.180, B:L.184, A:I.178, A:I.178, A:L.186 Metal complexes: B:H.183 pi-Stacking: A:F.182 BCL.14: 27 residues within 4Å: Chain A: V.158, Y.163, F.182 Chain B: M.123, V.127, A.154, L.157, W.158, L.161, W.186, T.187, N.188, F.190, S.191, L.197, F.198, H.203, S.206, I.207, Y.211, V.277, G.281, I.285 Ligands: BCL.1, BCL.8, BCL.9, BPH.15 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:V.127, B:L.157, B:W.158, B:L.161, B:W.186, B:T.187, B:F.190, B:L.197, B:I.207, B:I.207, B:Y.211, B:V.277 Metal complexes: B:H.203 BCL.33: 19 residues within 4Å: Chain 5: A.24, M.28, A.31 Chain D: G.21, L.24, F.25, A.28, H.32, W.43 Chain E: L.30, F.31, V.34, A.35, A.38, H.39, W.45 Ligands: BCL.35, SPO.107, LDA.109 11 PLIP interactions: 3 interactions with chain E, 6 interactions with chain D, 2 interactions with chain 5, Hydrophobic interactions: E:L.30, E:A.38, E:W.45, D:L.24, D:A.28, D:W.43, D:W.43, D:W.43, 5:A.24, 5:A.31 Metal complexes: D:H.32 BCL.35: 18 residues within 4Å: Chain D: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain E: F.31, S.32, A.35, I.36, H.39, W.48, F.49 Ligands: BCL.33, BCL.36, SPO.39, SPO.107 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain D, Hydrophobic interactions: E:F.31, E:A.35, E:I.36, E:W.48, E:W.48, E:F.49, D:I.31, D:Y.41 Metal complexes: E:H.39 BCL.36: 22 residues within 4Å: Chain D: V.16, F.23, I.31 Chain E: Y.24, F.49 Chain F: L.24, F.25, A.28, H.32, W.43 Chain G: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: LMT.34, BCL.35, SPO.39, BCL.40, SPO.107 18 PLIP interactions: 5 interactions with chain D, 8 interactions with chain F, 3 interactions with chain G, 2 interactions with chain E, Hydrophobic interactions: D:V.16, D:F.23, D:F.23, D:I.31, D:I.31, F:F.25, F:F.25, F:W.43, F:W.43, F:W.43, F:W.43, G:A.38, G:V.42, G:W.45, E:Y.24, E:F.49 pi-Stacking: F:H.32 Metal complexes: F:H.32 BCL.40: 20 residues within 4Å: Chain F: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain G: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.36, SPO.37, BCL.42, SPO.44 12 PLIP interactions: 9 interactions with chain G, 3 interactions with chain F, Hydrophobic interactions: G:F.31, G:A.35, G:I.36, G:V.42, G:Y.43, G:W.48, G:W.48, G:F.49, F:I.31, F:L.35, F:Y.41 Metal complexes: G:H.39 BCL.42: 24 residues within 4Å: Chain F: W.8, V.16, F.23, I.31 Chain G: H.21, Y.24, F.49 Chain H: F.25, A.28, H.32, L.35, W.43 Chain I: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.37, LMT.38, BCL.40, SPO.44, BCL.46 16 PLIP interactions: 3 interactions with chain I, 2 interactions with chain G, 5 interactions with chain F, 6 interactions with chain H, Hydrophobic interactions: I:A.38, I:V.42, I:W.45, G:Y.24, G:F.49, F:W.8, F:V.16, F:F.23, F:I.31, F:I.31, H:L.35, H:W.43, H:W.43, H:W.43, H:W.43 Metal complexes: H:H.32 BCL.46: 19 residues within 4Å: Chain H: L.24, L.27, A.28, I.31, H.32, Y.41 Chain I: F.31, S.32, A.35, I.36, H.39, Y.43, W.48, F.49 Chain J: W.43 Ligands: BCL.42, SPO.43, SPO.48, BCL.49 15 PLIP interactions: 2 interactions with chain H, 13 interactions with chain I, Hydrophobic interactions: H:I.31, H:Y.41, I:F.31, I:A.35, I:I.36, I:H.39, I:Y.43, I:W.48, I:W.48, I:W.48, I:W.48, I:W.48, I:F.49, I:F.49 Metal complexes: I:H.39 BCL.49: 27 residues within 4Å: Chain H: F.4, V.16, Q.20, F.23, I.31 Chain I: Y.24, F.49 Chain J: G.21, L.24, F.25, A.28, H.32, W.43 Chain K: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: PGV.29, SPO.43, LMT.45, BCL.46, SPO.47, SPO.48, BCL.51 16 PLIP interactions: 7 interactions with chain J, 5 interactions with chain H, 3 interactions with chain K, 1 interactions with chain I, Hydrophobic interactions: J:L.24, J:F.25, J:W.43, J:W.43, J:W.43, J:W.43, H:F.4, H:V.16, H:F.23, H:I.31, H:I.31, K:A.38, K:V.42, K:W.45, I:F.49 Metal complexes: J:H.32 BCL.51: 19 residues within 4Å: Chain J: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain K: F.31, S.32, A.35, H.39, Y.43, W.48, F.49 Chain L: W.43 Ligands: SPO.47, BCL.49, BCL.53, SPO.56 12 PLIP interactions: 10 interactions with chain K, 2 interactions with chain J, Hydrophobic interactions: K:F.31, K:A.35, K:Y.43, K:W.48, K:W.48, K:W.48, K:W.48, K:F.49, K:F.49, J:L.35, J:Y.41 Metal complexes: K:H.39 BCL.53: 26 residues within 4Å: Chain J: Q.20, F.23, I.31 Chain K: H.21, Y.24, L.28, F.49 Chain L: G.21, L.24, F.25, A.28, H.32, W.43 Chain M: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: CDL.27, SPO.47, LMT.50, BCL.51, SPO.56, BCL.57 17 PLIP interactions: 5 interactions with chain J, 3 interactions with chain M, 3 interactions with chain K, 6 interactions with chain L, Hydrophobic interactions: J:Q.20, J:F.23, J:F.23, J:I.31, J:I.31, M:V.42, M:V.42, M:W.45, K:Y.24, K:L.28, K:F.49, L:F.25, L:W.43, L:W.43, L:W.43, L:W.43 Metal complexes: L:H.32 BCL.57: 20 residues within 4Å: Chain L: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain M: F.31, S.32, A.35, I.36, H.39, V.42, W.48, F.49 Chain N: W.43 Ligands: BCL.53, SPO.54, BCL.58, SPO.61 11 PLIP interactions: 9 interactions with chain M, 2 interactions with chain L, Hydrophobic interactions: M:F.31, M:A.35, M:V.42, M:W.48, M:W.48, M:W.48, M:F.49, M:F.49, L:I.31, L:Y.41 Metal complexes: M:H.39 BCL.58: 26 residues within 4Å: Chain L: V.16, F.23, I.31 Chain M: Y.24, M.25, F.49 Chain N: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain O: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.54, PGV.55, BCL.57, SPO.59, SPO.61, BCL.62 17 PLIP interactions: 2 interactions with chain M, 5 interactions with chain L, 7 interactions with chain N, 3 interactions with chain O, Hydrophobic interactions: M:Y.24, M:F.49, L:V.16, L:F.23, L:F.23, L:I.31, L:I.31, N:L.24, N:L.35, N:W.43, N:W.43, N:W.43, N:W.43, O:A.38, O:V.42, O:W.45 Metal complexes: N:H.32 BCL.62: 20 residues within 4Å: Chain N: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain O: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.58, SPO.59, BCL.66, SPO.67 13 PLIP interactions: 11 interactions with chain O, 2 interactions with chain N, Hydrophobic interactions: O:F.31, O:A.35, O:I.36, O:V.42, O:Y.43, O:W.48, O:W.48, O:W.48, O:F.49, O:F.49, N:I.31, N:Y.41 Metal complexes: O:H.39 BCL.66: 23 residues within 4Å: Chain N: F.4, F.23, I.31 Chain O: H.21, Y.24, F.49 Chain P: L.24, F.25, A.28, H.32, L.35, W.43 Chain Q: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.59, BCL.62, SPO.67, BCL.68 16 PLIP interactions: 3 interactions with chain N, 8 interactions with chain P, 1 interactions with chain O, 4 interactions with chain Q, Hydrophobic interactions: N:F.4, N:F.23, N:I.31, P:L.24, P:F.25, P:L.35, P:W.43, P:W.43, P:W.43, O:F.49, Q:A.38, Q:V.42, Q:W.45 pi-Stacking: P:H.32 Metal complexes: P:H.32 Hydrogen bonds: Q:H.39 BCL.68: 20 residues within 4Å: Chain P: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain Q: F.31, S.32, A.35, I.36, H.39, Y.43, W.48, F.49 Chain R: W.43 Ligands: SPO.60, BCL.66, BCL.70, SPO.72 9 PLIP interactions: 7 interactions with chain Q, 2 interactions with chain P, Hydrophobic interactions: Q:F.31, Q:A.35, Q:W.48, Q:W.48, Q:W.48, Q:W.48, P:I.31, P:Y.41 Metal complexes: Q:H.39 BCL.70: 24 residues within 4Å: Chain P: V.16, Q.20, F.23, L.24, I.31 Chain Q: Y.24, F.49 Chain R: L.24, F.25, A.28, H.32, W.43 Chain S: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.60, BCL.68, SPO.71, SPO.72, BCL.74 16 PLIP interactions: 6 interactions with chain R, 3 interactions with chain S, 5 interactions with chain P, 2 interactions with chain Q, Hydrophobic interactions: R:F.25, R:W.43, R:W.43, R:W.43, S:A.38, S:V.42, S:W.45, P:V.16, P:F.23, P:L.24, P:I.31, P:I.31, Q:Y.24, Q:F.49 pi-Cation interactions: R:H.32 Metal complexes: R:H.32 BCL.74: 19 residues within 4Å: Chain R: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain S: F.31, S.32, A.35, I.36, H.39, Y.43, W.48, F.49 Ligands: BCL.70, SPO.71, SPO.75, BCL.76 14 PLIP interactions: 4 interactions with chain R, 10 interactions with chain S, Hydrophobic interactions: R:I.31, R:L.35, R:L.35, R:Y.41, S:F.31, S:A.35, S:I.36, S:W.48, S:W.48, S:W.48, S:W.48, S:W.48, S:F.49 Metal complexes: S:H.39 BCL.76: 25 residues within 4Å: Chain R: I.7, V.16, F.23, I.31 Chain S: H.21, Y.24, M.25, F.49 Chain T: G.21, L.24, F.25, A.28, H.32, W.43 Chain U: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.71, BCL.74, SPO.75, BCL.79 16 PLIP interactions: 6 interactions with chain T, 5 interactions with chain R, 4 interactions with chain U, 1 interactions with chain S, Hydrophobic interactions: T:L.24, T:F.25, T:W.43, T:W.43, T:W.43, R:I.7, R:V.16, R:F.23, R:I.31, R:I.31, U:A.38, U:V.42, U:W.45, S:F.49 Metal complexes: T:H.32 Hydrogen bonds: U:H.39 BCL.79: 20 residues within 4Å: Chain T: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain U: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Ligands: BCL.76, SPO.77, SPO.80, BCL.83 10 PLIP interactions: 2 interactions with chain T, 8 interactions with chain U, Hydrophobic interactions: T:I.31, T:Y.41, U:F.31, U:A.35, U:V.42, U:W.48, U:W.48, U:W.48, U:F.49 Metal complexes: U:H.39 BCL.83: 24 residues within 4Å: Chain T: V.16, Q.20, F.23, I.31 Chain U: Y.24, F.49 Chain V: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain W: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.77, BCL.79, SPO.80, BCL.85 21 PLIP interactions: 9 interactions with chain V, 6 interactions with chain T, 4 interactions with chain W, 2 interactions with chain U, Hydrophobic interactions: V:L.24, V:L.24, V:F.25, V:L.35, V:W.43, V:W.43, V:W.43, T:V.16, T:Q.20, T:F.23, T:F.23, T:I.31, T:I.31, W:A.38, W:V.42, W:W.45, U:Y.24, U:F.49 pi-Stacking: V:H.32 Metal complexes: V:H.32 Hydrogen bonds: W:H.39 BCL.85: 20 residues within 4Å: Chain V: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain W: F.31, S.32, A.35, I.36, H.39, Y.43, W.48, F.49 Chain X: W.43 Ligands: SPO.78, BCL.83, BCL.86, SPO.88 13 PLIP interactions: 5 interactions with chain V, 8 interactions with chain W, Hydrophobic interactions: V:I.31, V:I.31, V:L.35, V:L.35, V:Y.41, W:F.31, W:A.35, W:I.36, W:Y.43, W:W.48, W:W.48, W:F.49 Metal complexes: W:H.39 BCL.86: 24 residues within 4Å: Chain V: Q.20, F.23, I.31 Chain W: H.21, Y.24, F.49 Chain X: G.21, L.24, F.25, A.28, H.32, W.43 Chain Y: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: SPO.78, PGV.84, BCL.85, SPO.88, BCL.91 15 PLIP interactions: 2 interactions with chain W, 3 interactions with chain Y, 7 interactions with chain X, 3 interactions with chain V, Hydrophobic interactions: W:Y.24, W:F.49, Y:A.38, Y:V.42, Y:W.45, X:L.24, X:F.25, X:W.43, X:W.43, X:W.43, V:F.23, V:I.31, V:I.31 pi-Cation interactions: X:H.32 Metal complexes: X:H.32 BCL.91: 18 residues within 4Å: Chain X: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain Y: F.31, S.32, A.35, H.39, W.48, F.49 Chain Z: W.43 Ligands: BCL.86, SPO.87, BCL.94, SPO.95 11 PLIP interactions: 9 interactions with chain Y, 2 interactions with chain X, Hydrophobic interactions: Y:F.31, Y:A.35, Y:H.39, Y:W.48, Y:W.48, Y:W.48, Y:W.48, Y:F.49, X:I.31, X:Y.41 Metal complexes: Y:H.39 BCL.94: 27 residues within 4Å: Chain 0: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Chain X: F.4, Q.20, F.23, I.31 Chain Y: H.21, Y.24, M.25, F.49 Chain Z: G.21, L.24, F.25, A.28, H.32, W.43 Ligands: SPO.87, LMT.89, SPO.90, BCL.91, SPO.95, BCL.96 15 PLIP interactions: 5 interactions with chain Z, 2 interactions with chain Y, 3 interactions with chain 0, 5 interactions with chain X, Hydrophobic interactions: Z:F.25, Z:W.43, Z:W.43, Z:W.43, Y:Y.24, Y:F.49, 0:A.38, 0:V.42, 0:W.45, X:F.4, X:F.23, X:F.23, X:I.31, X:I.31 Metal complexes: Z:H.32 BCL.96: 19 residues within 4Å: Chain 0: F.31, S.32, A.35, I.36, H.39, Y.43, W.48, F.49 Chain 1: W.43 Chain Z: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Ligands: BCL.94, BCL.99, SPO.101 10 PLIP interactions: 8 interactions with chain 0, 2 interactions with chain Z, Hydrophobic interactions: 0:F.31, 0:A.35, 0:I.36, 0:H.39, 0:W.48, 0:W.48, 0:F.49, Z:I.31, Z:Y.41 Metal complexes: 0:H.39 BCL.99: 23 residues within 4Å: Chain 0: H.21, Y.24, M.25, F.49 Chain 1: L.24, F.25, A.28, H.32, L.35, W.43 Chain 2: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Chain Z: I.31 Ligands: SPO.90, BCL.96, LMT.97, SPO.101, BCL.102 12 PLIP interactions: 3 interactions with chain 2, 6 interactions with chain 1, 2 interactions with chain Z, 1 interactions with chain 0, Hydrophobic interactions: 2:A.38, 2:V.42, 2:W.45, 1:F.25, 1:L.35, 1:W.43, 1:W.43, 1:W.43, Z:I.31, Z:I.31, 0:F.49 Metal complexes: 1:H.32 BCL.102: 17 residues within 4Å: Chain 1: L.24, L.27, A.28, I.31, H.32 Chain 2: F.31, S.32, A.35, I.36, H.39, Y.43, W.48, F.49 Chain 3: W.43 Ligands: BCL.99, BCL.103, SPO.104 9 PLIP interactions: 7 interactions with chain 2, 2 interactions with chain 1, Hydrophobic interactions: 2:F.31, 2:A.35, 2:I.36, 2:Y.43, 2:W.48, 2:W.48, 1:I.31, 1:I.31 Metal complexes: 2:H.39 BCL.103: 18 residues within 4Å: Chain 1: F.11, I.31 Chain 3: F.17, G.21, V.22, F.25, A.28, H.32, W.43 Chain 4: F.31, A.35, A.38, H.39, W.45 Ligands: SPO.100, BCL.102, SPO.104, BCL.105 12 PLIP interactions: 3 interactions with chain 1, 8 interactions with chain 3, 1 interactions with chain 4, Hydrophobic interactions: 1:F.11, 1:I.31, 1:I.31, 3:F.17, 3:V.22, 3:F.25, 3:W.43, 3:W.43, 3:W.43, 3:W.43, 4:W.45 Metal complexes: 3:H.32 BCL.105: 13 residues within 4Å: Chain 3: L.24, L.27, A.28, I.31, H.32 Chain 4: F.31, S.32, A.35, I.36, H.39, V.42, W.48 Ligands: BCL.103 4 PLIP interactions: 3 interactions with chain 4, 1 interactions with chain 3, Hydrophobic interactions: 4:A.35, 4:V.42, 3:I.31 Metal complexes: 4:H.39

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.2: 31 residues within 4Å: Chain A: T.39, F.42, A.43, G.46, I.50, A.94, A.97, F.98, W.101, E.105, I.118, A.121, F.122, F.124, A.125, F.147, Y.149, G.150, H.154, V.242 Chain B: Y.211, A.214, L.215, M.219, W.253, T.256, M.257 Ligands: BCL.1, BCL.8, PGV.10, U10.17 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.43, A:I.50, A:A.94, A:A.97, A:A.121, A:F.122, A:F.122, A:F.124, A:A.125, A:F.147, A:Y.149, A:Y.149, A:V.242, A:V.242, B:Y.211, B:A.214 Hydrogen bonds: A:E.105 pi-Stacking: A:F.122 BPH.15: 26 residues within 4Å: Chain A: F.182, A.185, L.186, A.189, L.190, F.217, L.220, V.221 Chain B: S.60, L.61, G.64, L.65, A.126, V.127, W.130, T.147, A.150, F.151, A.154, A.274, V.275, T.278 Ligands: BCL.9, BCL.14, CDL.82, PGV.84 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:F.182, A:A.185, A:L.186, A:L.190, B:L.65, B:A.126, B:A.150, B:F.151, B:F.151 pi-Stacking: B:F.151

3 x U10: UBIQUINONE-10(Non-covalent)

U10.3: 18 residues within 4Å: Chain A: I.176, T.179, T.183, L.190, H.191, L.194, E.213, D.214, F.217, V.221, Y.223, S.224, I.225, G.226, T.227, I.230, L.233 Ligands: U10.4 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.176, A:L.190, A:L.194, A:F.217, A:F.217, A:F.217, A:F.217, A:V.221, A:I.225, A:I.230, A:I.230, A:L.233, A:L.233 Hydrogen bonds: A:I.225, A:G.226 U10.4: 12 residues within 4Å: Chain A: M.175, T.179, W.264, W.266, W.267 Chain B: L.87, R.88, L.90, F.91 Ligands: U10.3, PGV.6, BCL.9 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:T.179, A:W.264, A:W.267, B:L.87, B:L.90, B:F.91, B:F.91 Hydrogen bonds: B:L.90, B:F.91 U10.17: 23 residues within 4Å: Chain A: F.30, V.32, F.40, W.101 Chain B: L.215, M.219, H.220, T.223, A.249, A.250, W.253, M.257, F.259, N.260, A.261, T.262, M.263, I.266, W.269 Chain F: V.18 Ligands: BCL.1, BPH.2, BCL.8 14 PLIP interactions: 5 interactions with chain A, 8 interactions with chain B, 1 interactions with chain F Hydrophobic interactions: A:F.30, A:F.30, A:V.32, A:V.32, A:F.40, B:L.215, B:M.219, B:W.253, B:F.259, B:I.266, B:W.269, B:W.269, F:V.18 Hydrogen bonds: B:A.261

13 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)

PGV.5: 12 residues within 4Å: Chain A: I.50, A.51, G.58, T.59, W.60, N.61, P.62 Chain J: L.33, S.37 Ligands: PGV.12, LMT.41, LMT.52 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain J Hydrophobic interactions: A:I.50, A:A.51, A:P.62, J:L.33 Hydrogen bonds: A:W.60, A:N.61 PGV.6: 10 residues within 4Å: Chain 6: W.32 Chain A: D.262, W.263, Q.265, W.266 Ligands: U10.4, PGV.93, PGV.106, LMT.111, LMT.112 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain 6 Hydrophobic interactions: A:W.263, 6:W.32 PGV.10: 17 residues within 4Å: Chain A: A.2, P.29, F.30, A.44, I.47 Chain B: R.254 Chain C: A.25, I.28, L.42, N.52, P.55 Chain H: R.15 Ligands: BPH.2, PGV.26, CDL.27, PGV.29, PGV.30 7 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 2 interactions with chain H, 2 interactions with chain A Hydrophobic interactions: C:I.28, A:I.47, A:I.47 Hydrogen bonds: C:N.52 Salt bridges: B:R.254, H:R.15, H:R.15 PGV.12: 21 residues within 4Å: Chain A: I.50, N.61, P.62, Q.63, Y.149, G.150, I.151, W.152 Chain B: P.201, L.205, H.302, M.304 Chain C: N.9, I.17, Y.18, W.21, L.24 Ligands: PGV.5, BCL.8, LMT.24, PGV.26 10 PLIP interactions: 5 interactions with chain A, 3 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: A:I.50, A:P.62, A:Q.63, A:I.151, A:W.152, C:Y.18, C:L.24 Hydrogen bonds: C:N.9, B:H.302 Salt bridges: B:H.302 PGV.23: 16 residues within 4Å: Chain B: L.56, L.59, F.124, V.125, W.128, S.129, W.131, G.132, Y.135 Chain R: A.19, V.22, F.23, L.26 Chain T: F.25 Ligands: PGV.65, LMT.73 12 PLIP interactions: 5 interactions with chain R, 5 interactions with chain B, 2 interactions with chain T Hydrophobic interactions: R:V.22, R:F.23, R:F.23, R:L.26, R:L.26, B:L.59, B:F.124, B:W.128, B:W.128, B:W.128, T:F.25, T:F.25 PGV.26: 13 residues within 4Å: Chain A: F.30 Chain B: F.209, M.257, F.259, W.269, M.273 Chain C: I.28, Q.32, Y.40, F.56 Ligands: BCL.1, PGV.10, PGV.12 7 PLIP interactions: 2 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:I.28, B:F.209, B:F.259, B:F.259, B:W.269 Hydrogen bonds: C:Q.32 Salt bridges: B:R.254 PGV.29: 15 residues within 4Å: Chain C: N.52, Q.53, G.54 Chain H: F.11, R.15, V.16, A.19, F.23 Chain J: R.14, V.18, V.22, F.25 Ligands: PGV.10, PGV.30, BCL.49 5 PLIP interactions: 3 interactions with chain C, 1 interactions with chain J, 1 interactions with chain H Hydrogen bonds: C:N.52, C:Q.53, C:G.54 Hydrophobic interactions: J:V.22 Salt bridges: H:R.15 PGV.30: 21 residues within 4Å: Chain A: A.2, V.27, G.28, F.40 Chain C: N.44, A.50, N.52, E.94 Chain F: F.11, R.15, V.16 Chain H: R.14, R.15, V.18, A.19, G.21, V.22, F.25, L.26 Ligands: PGV.10, PGV.29 20 PLIP interactions: 4 interactions with chain F, 11 interactions with chain H, 3 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: F:F.11, F:V.16, H:V.18, H:V.18, H:A.19, H:V.22, H:F.25, H:F.25, H:L.26, H:L.26, A:V.27, A:F.40 Salt bridges: F:R.15, F:R.15, H:R.14, H:R.15 Hydrogen bonds: H:R.15, A:A.2, C:N.44, C:A.51 PGV.55: 14 residues within 4Å: Chain L: F.11, D.12, R.15, V.16, A.19 Chain N: R.15, V.18, A.19, G.21, V.22, F.25, L.26 Ligands: CDL.28, BCL.58 11 PLIP interactions: 4 interactions with chain L, 7 interactions with chain N Hydrophobic interactions: L:A.19, N:R.15, N:V.18, N:A.19, N:V.22, N:V.22, N:F.25, N:L.26 Hydrogen bonds: L:D.12 Salt bridges: L:R.15, L:R.15 PGV.65: 12 residues within 4Å: Chain B: W.128, W.131, Y.135, Q.139 Chain P: F.11, R.15, V.16 Chain R: G.21, V.22, F.25 Ligands: PGV.23, LMT.73 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain R Hydrophobic interactions: B:W.128, B:W.131, R:V.22, R:F.25 Hydrogen bonds: B:Y.135, B:Y.135, B:Q.139 PGV.84: 16 residues within 4Å: Chain V: F.11, R.15, V.16, A.19, F.23 Chain X: R.14, R.15, F.17, V.18, G.21, V.22, F.25 Ligands: BPH.15, SPO.18, CDL.82, BCL.86 5 PLIP interactions: 4 interactions with chain X, 1 interactions with chain V Hydrophobic interactions: X:V.22, X:V.22, X:F.25 Hydrogen bonds: X:R.14 Salt bridges: V:R.15 PGV.93: 17 residues within 4Å: Chain 6: F.33 Chain A: W.272, W.273, I.276 Chain B: N.82, P.83, L.87 Chain X: L.26, M.30, I.34 Chain Z: L.33, L.36, S.37, N.42, E.45 Ligands: PGV.6, LMT.92 11 PLIP interactions: 4 interactions with chain Z, 2 interactions with chain B, 1 interactions with chain A, 2 interactions with chain X, 2 interactions with chain 6 Hydrophobic interactions: Z:L.33, B:P.83, B:L.87, A:W.272, X:L.26, X:I.34, 6:F.33, 6:F.33 Hydrogen bonds: Z:N.42, Z:E.45, Z:E.45 PGV.106: 14 residues within 4Å: Chain 5: P.56, N.60 Chain A: P.172, A.173, I.176, I.251, I.255, W.256, F.257, D.258, W.260, W.263 Ligands: PGV.6, LMT.111 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain 5 Hydrophobic interactions: A:P.172, A:A.173, A:I.176, A:I.251, A:I.255, A:I.255, A:W.256, A:W.260 Hydrogen bonds: 5:N.60

6 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.7: 8 residues within 4Å: Chain A: L.17, A.102, L.103, R.110, P.119, F.120, A.123 Ligands: LDA.13 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.102, A:L.103, A:A.123 LDA.11: 3 residues within 4Å: Chain 5: V.37 Chain A: L.17 Ligands: LDA.108 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain 5 Hydrophobic interactions: A:L.17, 5:V.37 LDA.13: 8 residues within 4Å: Chain A: Y.116, H.117, F.120 Chain B: E.3, Q.5, I.7 Chain C: N.206 Ligands: LDA.7 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.120, A:F.120, A:F.120, B:Q.5, B:I.7 Hydrogen bonds: A:Y.116, A:Y.116 Salt bridges: B:E.3 LDA.81: 10 residues within 4Å: Chain B: I.73, Y.77, L.110, K.111, L.115 Chain V: L.33, L.36, S.37, N.42, E.45 9 PLIP interactions: 4 interactions with chain V, 5 interactions with chain B Hydrophobic interactions: V:L.33, B:I.73, B:Y.77, B:L.110, B:K.111, B:L.115 Hydrogen bonds: V:N.42, V:E.45 Salt bridges: V:E.45 LDA.108: 6 residues within 4Å: Chain 5: K.29, W.33 Chain A: V.18 Chain D: V.18, V.22 Ligands: LDA.11 5 PLIP interactions: 2 interactions with chain 5, 1 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: 5:W.33, A:V.18, D:V.22, D:V.22 pi-Cation interactions: 5:W.33 LDA.109: 7 residues within 4Å: Chain 5: M.28, A.31, G.32, G.35, G.36, F.39 Ligands: BCL.33 2 PLIP interactions: 2 interactions with chain 5 Hydrophobic interactions: 5:A.31 Hydrogen bonds: 5:G.35

1 x FE: FE (III) ION(Non-covalent)

FE.16: 5 residues within 4Å: Chain A: H.191, H.231 Chain B: H.220, E.235, H.267 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.220, B:E.235, B:H.267, A:H.191, A:H.231

27 x SPO: SPHEROIDENE(Non-covalent)

SPO.18: 27 residues within 4Å: Chain B: W.67, F.68, I.71, G.72, F.75, W.76, F.86, F.106, W.116, L.117, S.120, M.123, F.124, W.158, M.159, G.162, F.163, W.172, V.176, Y.178, G.179, I.180, H.183 Chain R: M.30 Chain T: L.33 Ligands: BCL.9, PGV.84 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain T Hydrophobic interactions: B:W.67, B:F.68, B:F.68, B:F.68, B:I.71, B:F.75, B:F.75, B:F.106, B:W.116, B:F.124, B:W.158, B:F.163, B:W.172, B:V.176, B:V.176, B:I.180, T:L.33 SPO.37: 28 residues within 4Å: Chain D: K.3, F.4, K.6, I.7, I.10 Chain E: L.7 Chain F: F.17, Q.20, F.23, L.24, L.27, M.30, I.34 Chain G: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain H: F.25, A.28, H.32, L.33 Ligands: SPO.39, BCL.40, BCL.42, SPO.44 20 PLIP interactions: 2 interactions with chain H, 7 interactions with chain F, 3 interactions with chain D, 7 interactions with chain G, 1 interactions with chain E Hydrophobic interactions: H:F.25, H:A.28, F:F.17, F:F.23, F:F.23, F:L.24, F:L.27, F:L.27, F:I.34, D:K.6, D:K.6, D:I.7, G:L.20, G:V.23, G:V.23, G:V.23, G:Y.24, G:Y.24, G:F.31, E:L.7 SPO.39: 12 residues within 4Å: Chain E: F.49 Chain F: F.17, Q.20 Chain G: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: BCL.35, BCL.36, SPO.37 6 PLIP interactions: 5 interactions with chain G, 1 interactions with chain E Hydrophobic interactions: G:V.34, G:A.38, G:A.41, G:V.42, G:W.45, E:F.49 SPO.43: 25 residues within 4Å: Chain F: F.4, K.6, I.7, I.10 Chain G: L.7 Chain H: F.17, Q.20, F.23, L.24, L.27, M.30 Chain I: E.19, L.20, V.23, Y.24, G.27, L.28 Chain J: F.25, V.29, H.32, L.33 Ligands: SPO.44, BCL.46, SPO.48, BCL.49 20 PLIP interactions: 6 interactions with chain I, 5 interactions with chain F, 3 interactions with chain J, 5 interactions with chain H, 1 interactions with chain G Hydrophobic interactions: I:E.19, I:L.20, I:V.23, I:V.23, I:L.28, I:L.28, F:F.4, F:K.6, F:K.6, F:I.7, F:I.7, J:F.25, J:V.29, J:H.32, H:F.17, H:F.23, H:F.23, H:L.24, H:L.27, G:L.7 SPO.44: 13 residues within 4Å: Chain G: Y.43, F.49 Chain H: F.17, Y.51 Chain I: V.34, A.38, A.41, W.45 Ligands: SPO.37, LMT.38, BCL.40, BCL.42, SPO.43 7 PLIP interactions: 4 interactions with chain I, 2 interactions with chain G, 1 interactions with chain H Hydrophobic interactions: I:V.34, I:A.38, I:A.41, I:W.45, G:F.49, G:F.49, H:F.17 SPO.47: 27 residues within 4Å: Chain H: K.6, I.7, I.10 Chain I: D.6 Chain J: F.17, Q.20, F.23, L.24, L.27, M.30, I.31 Chain K: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain L: F.25, V.29, H.32, L.33 Ligands: SPO.48, BCL.49, BCL.51, BCL.53, SPO.56 17 PLIP interactions: 6 interactions with chain J, 3 interactions with chain L, 4 interactions with chain K, 4 interactions with chain H Hydrophobic interactions: J:F.17, J:F.23, J:L.24, J:L.27, J:L.27, J:I.31, L:F.25, L:V.29, L:H.32, K:E.19, K:V.23, K:L.28, K:F.31, H:K.6, H:K.6, H:I.7, H:I.10 SPO.48: 15 residues within 4Å: Chain I: Y.43, F.49 Chain J: F.17, Q.20, K.50, Y.51 Chain K: V.34, A.38, A.41, V.42, W.45 Ligands: SPO.43, BCL.46, SPO.47, BCL.49 10 PLIP interactions: 6 interactions with chain K, 1 interactions with chain J, 3 interactions with chain I Hydrophobic interactions: K:V.34, K:A.38, K:A.41, K:V.42, K:W.45, K:W.45, J:F.17, I:F.49, I:F.49, I:F.49 SPO.54: 24 residues within 4Å: Chain J: F.4, K.6, I.7, I.10 Chain L: Q.20, F.23, L.24, L.27, M.30, I.31 Chain M: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain N: F.25, V.29, H.32, L.33 Ligands: SPO.56, BCL.57, BCL.58 20 PLIP interactions: 4 interactions with chain J, 7 interactions with chain M, 3 interactions with chain N, 6 interactions with chain L Hydrophobic interactions: J:F.4, J:K.6, J:I.7, J:I.10, M:E.19, M:L.20, M:L.20, M:V.23, M:V.23, M:L.28, M:F.31, N:F.25, N:V.29, N:H.32, L:F.23, L:F.23, L:L.24, L:L.24, L:L.27, L:I.31 SPO.56: 13 residues within 4Å: Chain K: F.49 Chain L: F.17, Q.20, K.50 Chain M: V.34, A.38, A.41, V.42, W.45 Ligands: SPO.47, BCL.51, BCL.53, SPO.54 8 PLIP interactions: 5 interactions with chain M, 2 interactions with chain K, 1 interactions with chain L Hydrophobic interactions: M:V.34, M:A.38, M:A.41, M:V.42, M:W.45, K:F.49, K:F.49, L:F.17 SPO.59: 25 residues within 4Å: Chain L: F.4, K.6, I.7, I.10 Chain M: L.7 Chain N: F.17, Q.20, F.23, L.24, L.27 Chain O: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain P: F.25, V.29, H.32, L.33 Ligands: BCL.58, SPO.61, BCL.62, BCL.66 18 PLIP interactions: 5 interactions with chain O, 3 interactions with chain P, 4 interactions with chain N, 4 interactions with chain L, 2 interactions with chain M Hydrophobic interactions: O:E.19, O:L.20, O:L.20, O:L.28, O:F.31, P:F.25, P:V.29, P:H.32, N:F.17, N:F.23, N:L.24, N:L.27, L:F.4, L:K.6, L:I.7, L:I.10, M:L.7, M:L.7 SPO.60: 23 residues within 4Å: Chain N: K.3, F.4, K.6, I.7, I.10 Chain O: L.7 Chain P: F.17, F.23, L.27 Chain Q: L.20, V.23, Y.24, G.27, L.28, F.31 Chain R: A.28, V.29, H.32, L.36 Ligands: SPO.67, BCL.68, LMT.69, BCL.70 18 PLIP interactions: 4 interactions with chain N, 3 interactions with chain R, 5 interactions with chain Q, 5 interactions with chain P, 1 interactions with chain O Hydrophobic interactions: N:F.4, N:K.6, N:I.7, N:I.10, R:A.28, R:V.29, R:H.32, Q:L.20, Q:L.20, Q:V.23, Q:V.23, Q:F.31, P:F.17, P:F.17, P:F.23, P:F.23, P:L.27, O:L.7 SPO.61: 12 residues within 4Å: Chain M: Y.43, F.49 Chain N: F.17, Q.20, K.50 Chain O: V.34, A.38, A.41, W.45 Ligands: BCL.57, BCL.58, SPO.59 7 PLIP interactions: 3 interactions with chain M, 1 interactions with chain N, 3 interactions with chain O Hydrophobic interactions: M:F.49, M:F.49, M:F.49, N:F.17, O:V.34, O:A.41, O:W.45 SPO.67: 10 residues within 4Å: Chain O: F.49 Chain P: K.50 Chain Q: V.34, A.38, A.41, V.42, W.45 Ligands: SPO.60, BCL.62, BCL.66 7 PLIP interactions: 2 interactions with chain O, 5 interactions with chain Q Hydrophobic interactions: O:F.49, O:F.49, Q:V.34, Q:A.38, Q:A.41, Q:V.42, Q:W.45 SPO.71: 27 residues within 4Å: Chain P: F.4, K.6, I.7, I.10 Chain Q: L.7 Chain R: F.17, Q.20, F.23, L.24, L.27, I.31 Chain S: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain T: F.25, V.29, H.32, L.33 Ligands: BCL.70, SPO.72, BCL.74, SPO.75, BCL.76 26 PLIP interactions: 6 interactions with chain R, 3 interactions with chain T, 9 interactions with chain S, 6 interactions with chain P, 2 interactions with chain Q Hydrophobic interactions: R:F.17, R:F.23, R:F.23, R:L.24, R:L.27, R:I.31, T:F.25, T:V.29, T:H.32, S:E.19, S:L.20, S:L.20, S:V.23, S:V.23, S:L.28, S:L.28, S:L.28, S:F.31, P:F.4, P:K.6, P:K.6, P:I.7, P:I.7, P:I.10, Q:L.7, Q:L.7 SPO.72: 15 residues within 4Å: Chain Q: Y.43, F.49 Chain R: F.17, Q.20, K.50, Y.51 Chain S: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: BCL.68, BCL.70, SPO.71 8 PLIP interactions: 5 interactions with chain S, 3 interactions with chain Q Hydrophobic interactions: S:F.31, S:V.34, S:A.41, S:W.45, S:W.45, Q:F.49, Q:F.49, Q:F.49 SPO.75: 14 residues within 4Å: Chain S: Y.43, F.49 Chain T: F.17, Q.20, G.21, K.50 Chain U: V.34, A.38, A.41, V.42, W.45 Ligands: SPO.71, BCL.74, BCL.76 10 PLIP interactions: 7 interactions with chain U, 2 interactions with chain S, 1 interactions with chain T Hydrophobic interactions: U:V.34, U:A.38, U:A.41, U:V.42, U:W.45, U:W.45, U:W.45, S:F.49, S:F.49 Hydrogen bonds: T:K.50 SPO.77: 25 residues within 4Å: Chain R: F.4, K.6, I.7, I.10 Chain T: F.17, Q.20, F.23, L.24, L.27, M.30, I.34 Chain U: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain V: F.25, A.28, H.32, L.33 Ligands: BCL.79, SPO.80, BCL.83 16 PLIP interactions: 5 interactions with chain U, 2 interactions with chain V, 3 interactions with chain R, 6 interactions with chain T Hydrophobic interactions: U:L.20, U:V.23, U:V.23, U:Y.24, U:F.31, V:F.25, V:A.28, R:F.4, R:K.6, R:K.6, T:F.17, T:F.23, T:F.23, T:L.24, T:L.27, T:I.34 SPO.78: 26 residues within 4Å: Chain T: F.4, K.6, I.7, I.10 Chain U: L.7 Chain V: F.17, Q.20, L.24, L.27, M.30 Chain W: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain X: F.25, A.28, V.29, H.32, L.33 Ligands: SPO.80, BCL.85, BCL.86, SPO.88 22 PLIP interactions: 6 interactions with chain T, 4 interactions with chain V, 4 interactions with chain X, 7 interactions with chain W, 1 interactions with chain U Hydrophobic interactions: T:F.4, T:F.4, T:K.6, T:I.7, T:I.7, T:I.10, V:F.17, V:L.24, V:L.24, V:L.27, X:F.25, X:A.28, X:V.29, X:H.32, W:L.20, W:L.20, W:V.23, W:V.23, W:L.28, W:L.28, W:F.31, U:L.7 SPO.80: 13 residues within 4Å: Chain U: F.49 Chain V: F.17, K.50 Chain W: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: SPO.77, SPO.78, BCL.79, BCL.83 9 PLIP interactions: 4 interactions with chain W, 3 interactions with chain U, 2 interactions with chain V Hydrophobic interactions: W:F.31, W:V.34, W:A.41, W:V.42, U:F.49, U:F.49, U:F.49, V:F.17 Hydrogen bonds: V:K.50 SPO.87: 23 residues within 4Å: Chain V: F.4, K.6, I.7, I.10 Chain W: L.7 Chain X: Q.20, F.23, L.24, L.27 Chain Y: L.20, V.23, Y.24, G.27, L.28, F.31 Chain Z: F.25, A.28, V.29, H.32, L.33, L.36 Ligands: BCL.91, BCL.94 22 PLIP interactions: 5 interactions with chain Z, 1 interactions with chain W, 4 interactions with chain X, 4 interactions with chain V, 8 interactions with chain Y Hydrophobic interactions: Z:F.25, Z:A.28, Z:V.29, Z:H.32, Z:L.36, W:L.7, X:F.23, X:L.24, X:L.24, X:L.27, V:F.4, V:K.6, V:I.7, V:I.10, Y:L.20, Y:L.20, Y:V.23, Y:V.23, Y:Y.24, Y:Y.24, Y:L.28, Y:F.31 SPO.88: 13 residues within 4Å: Chain W: Y.43, F.49 Chain X: Q.20, K.50, Y.51 Chain Y: F.31, V.34, A.38, A.41, W.45 Ligands: SPO.78, BCL.85, BCL.86 8 PLIP interactions: 4 interactions with chain Y, 4 interactions with chain W Hydrophobic interactions: Y:F.31, Y:V.34, Y:A.41, Y:W.45, W:F.49, W:F.49, W:F.49, W:F.49 SPO.90: 24 residues within 4Å: Chain 0: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain 1: F.25, V.29, H.32, L.33 Chain X: F.4, K.6, I.7 Chain Z: F.17, Q.20, F.23, L.24, L.27, I.31 Ligands: BCL.94, SPO.95, BCL.99, SPO.101 18 PLIP interactions: 5 interactions with chain 0, 5 interactions with chain Z, 5 interactions with chain X, 3 interactions with chain 1 Hydrophobic interactions: 0:L.20, 0:V.23, 0:V.23, 0:Y.24, 0:F.31, Z:F.17, Z:F.23, Z:L.24, Z:L.27, Z:I.31, X:F.4, X:K.6, X:K.6, X:I.7, X:I.7, 1:F.25, 1:V.29, 1:H.32 SPO.95: 10 residues within 4Å: Chain 0: V.34, A.38, A.41, W.45 Chain Y: F.49 Chain Z: F.17, K.50 Ligands: SPO.90, BCL.91, BCL.94 7 PLIP interactions: 2 interactions with chain Y, 4 interactions with chain 0, 1 interactions with chain Z Hydrophobic interactions: Y:F.49, Y:F.49, 0:V.34, 0:A.38, 0:A.41, 0:W.45, Z:F.17 SPO.100: 27 residues within 4Å: Chain 0: L.7 Chain 1: F.17, Q.20, F.23, L.24, L.27, M.30, I.31, I.34 Chain 2: L.20, V.23, Y.24, G.27, L.28, F.31 Chain 3: A.28, V.29, H.32, L.33, L.36 Chain Z: F.4, K.6, I.7, I.10 Ligands: SPO.101, BCL.103, SPO.104 19 PLIP interactions: 2 interactions with chain 3, 1 interactions with chain 0, 6 interactions with chain 1, 3 interactions with chain Z, 7 interactions with chain 2 Hydrophobic interactions: 3:A.28, 3:H.32, 0:L.7, 1:F.17, 1:F.23, 1:L.24, 1:L.24, 1:L.27, 1:I.31, Z:F.4, Z:K.6, Z:I.7, 2:L.20, 2:V.23, 2:V.23, 2:Y.24, 2:L.28, 2:L.28, 2:F.31 SPO.101: 14 residues within 4Å: Chain 0: F.49 Chain 1: F.17, Q.20, K.50 Chain 2: V.34, A.38, A.41, V.42, W.45 Ligands: SPO.90, BCL.96, LMT.97, BCL.99, SPO.100 7 PLIP interactions: 5 interactions with chain 2, 2 interactions with chain 0 Hydrophobic interactions: 2:V.34, 2:A.38, 2:A.41, 2:V.42, 2:W.45, 0:F.49, 0:F.49 SPO.104: 13 residues within 4Å: Chain 2: Y.24, F.49 Chain 3: K.50, Y.51 Chain 4: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: SPO.100, BCL.102, BCL.103 10 PLIP interactions: 1 interactions with chain 3, 2 interactions with chain 2, 7 interactions with chain 4 Hydrogen bonds: 3:K.50 Hydrophobic interactions: 2:F.49, 2:F.49, 4:F.31, 4:F.31, 4:V.34, 4:A.38, 4:A.41, 4:V.42, 4:W.45 SPO.107: 24 residues within 4Å: Chain 5: R.20, V.23, A.24, M.27 Chain D: Q.20, L.24, L.27, M.30, I.31, I.34 Chain E: V.23, Y.24, S.26, G.27, L.28, L.30, F.31 Chain F: F.25, A.28, H.32, L.33 Ligands: BCL.33, BCL.35, BCL.36 9 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F, 2 interactions with chain 5, 3 interactions with chain E Hydrophobic interactions: D:L.27, D:I.31, F:A.28, F:H.32, 5:R.20, 5:V.23, E:Y.24, E:L.30, E:F.31

24 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.19: 12 residues within 4Å: Chain B: L.168, M.169, L.286, L.287, G.289, T.290, V.291 Chain C: M.1, L.12, A.16 Ligands: LMT.63, LMT.64 Ligand excluded by PLIP LMT.20: 12 residues within 4Å: Chain 6: S.5, F.7, A.48, P.50 Chain B: F.8, Q.10, L.39, W.42, F.43 Chain C: G.145, K.146 Ligands: LMT.21 Ligand excluded by PLIP LMT.21: 12 residues within 4Å: Chain 6: S.5, F.7, A.8, L.11 Chain B: E.3, Y.4, Q.5, N.6, I.7, F.8 Chain C: K.197 Ligands: LMT.20 Ligand excluded by PLIP LMT.24: 12 residues within 4Å: Chain B: N.301 Chain C: F.7, G.8, N.9, F.10, Y.18, W.21 Chain L: L.33, S.37 Ligands: PGV.12, CDL.27, LMT.52 Ligand excluded by PLIP LMT.25: 12 residues within 4Å: Chain C: M.1, V.4, D.11, L.12 Chain N: I.34, S.37, T.38, P.39 Chain P: N.42, L.44, E.45 Ligands: LMT.64 Ligand excluded by PLIP LMT.31: 12 residues within 4Å: Chain A: G.77, G.78, Q.88, T.91, I.92, L.134, W.143 Chain D: S.37, P.39, N.42, E.45 Ligands: LMT.32 Ligand excluded by PLIP LMT.32: 13 residues within 4Å: Chain A: G.78, A.79, P.80, L.81, Q.88, I.89, I.92 Chain D: M.30, S.37, P.39 Chain F: N.42, E.45 Ligands: LMT.31 Ligand excluded by PLIP LMT.34: 9 residues within 4Å: Chain D: M.1, S.2, F.4 Chain E: H.21, M.25, W.29 Chain G: L.30, V.34 Ligands: BCL.36 Ligand excluded by PLIP LMT.38: 8 residues within 4Å: Chain F: M.1, S.2, F.4 Chain G: H.21, M.25, W.29 Ligands: BCL.42, SPO.44 Ligand excluded by PLIP LMT.41: 9 residues within 4Å: Chain A: W.60 Chain H: M.30, I.34, S.37 Chain J: L.33, L.36, N.42, E.45 Ligands: PGV.5 Ligand excluded by PLIP LMT.45: 5 residues within 4Å: Chain H: M.1 Chain I: H.21, M.25, W.29 Ligands: BCL.49 Ligand excluded by PLIP LMT.50: 6 residues within 4Å: Chain J: M.1, S.2, F.4 Chain K: H.21, M.25 Ligands: BCL.53 Ligand excluded by PLIP LMT.52: 12 residues within 4Å: Chain J: L.26, V.29, L.33, I.34, S.37, T.38 Chain L: L.36, S.37, N.42, E.45 Ligands: PGV.5, LMT.24 Ligand excluded by PLIP LMT.63: 7 residues within 4Å: Chain B: L.168 Chain P: L.33, S.37, T.38 Ligands: LMT.19, LMT.64, LMT.69 Ligand excluded by PLIP LMT.64: 8 residues within 4Å: Chain C: M.1, L.12 Chain P: L.36, S.37, N.42 Ligands: LMT.19, LMT.25, LMT.63 Ligand excluded by PLIP LMT.69: 16 residues within 4Å: Chain B: Y.102, G.103, L.104, S.105, F.163, I.167 Chain P: M.30, I.34 Chain R: V.29, L.33, L.36, S.37, P.39, N.42 Ligands: SPO.60, LMT.63 Ligand excluded by PLIP LMT.73: 10 residues within 4Å: Chain B: D.24, S.55, L.56, L.136 Chain R: R.14, R.15, V.18, A.19 Ligands: PGV.23, PGV.65 Ligand excluded by PLIP LMT.89: 7 residues within 4Å: Chain 0: L.30 Chain X: S.2, F.4 Chain Y: H.21, M.25, W.29 Ligands: BCL.94 Ligand excluded by PLIP LMT.92: 9 residues within 4Å: Chain A: P.271, W.272 Chain Z: L.26, V.29, M.30, L.33, S.37 Ligands: PGV.93, LMT.98 Ligand excluded by PLIP LMT.97: 6 residues within 4Å: Chain 0: H.21, M.25, W.29 Chain Z: S.2 Ligands: BCL.99, SPO.101 Ligand excluded by PLIP LMT.98: 14 residues within 4Å: Chain 1: F.25, L.33, L.36, S.37, N.42, E.45 Chain 6: F.25, A.28, G.29, V.34, V.38 Chain A: W.272 Chain Z: I.34 Ligands: LMT.92 Ligand excluded by PLIP LMT.110: 6 residues within 4Å: Chain 5: M.28, K.29, G.32, W.33, G.36, V.37 Ligand excluded by PLIP LMT.111: 6 residues within 4Å: Chain 6: G.30, H.31, W.32 Ligands: PGV.6, PGV.106, LMT.112 Ligand excluded by PLIP LMT.112: 10 residues within 4Å: Chain 6: F.18, G.22, I.23, A.26, F.27, G.30, W.32, L.36 Ligands: PGV.6, LMT.111 Ligand excluded by PLIP

4 x CDL: CARDIOLIPIN(Non-covalent)

CDL.22: 21 residues within 4Å: Chain A: N.200, P.201 Chain B: G.144, K.145, H.146, W.149, L.152, S.153, W.156, R.268, W.272, L.279, I.283 Chain C: F.20, I.22, F.23, G.26, L.27, Y.30 Ligands: CDL.27, CDL.28 23 PLIP interactions: 16 interactions with chain B, 7 interactions with chain C Hydrophobic interactions: B:W.149, B:W.149, B:W.149, B:L.152, B:W.156, B:W.156, B:W.272, B:W.272, B:L.279, B:L.279, B:I.283, C:F.20, C:I.22, C:F.23, C:F.23, C:L.27, C:Y.30, C:Y.30 Hydrogen bonds: B:K.145 Salt bridges: B:H.146, B:H.146, B:H.146, B:R.268 CDL.27: 22 residues within 4Å: Chain C: I.22, A.25, G.26, Y.29, P.55, P.57 Chain J: F.11, D.12, R.15 Chain L: R.14, R.15, V.18, A.19, G.21, V.22, F.23, L.26 Chain N: F.25 Ligands: PGV.10, CDL.22, LMT.24, BCL.53 10 PLIP interactions: 2 interactions with chain J, 3 interactions with chain L, 4 interactions with chain C, 1 interactions with chain N Hydrogen bonds: J:D.12, C:Y.29, C:Y.29 Salt bridges: J:R.15, L:R.15 Hydrophobic interactions: L:V.22, L:L.26, C:Y.29, C:Y.29, N:F.25 CDL.28: 4 residues within 4Å: Chain C: Y.29, Y.30 Ligands: CDL.22, PGV.55 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Y.29, C:Y.30, C:Y.30 CDL.82: 16 residues within 4Å: Chain A: V.221, G.222, Y.223 Chain B: S.31, G.32, G.34, G.49, I.51, V.58 Chain T: R.15 Chain V: R.14, R.15, V.18, A.19 Ligands: BPH.15, PGV.84 10 PLIP interactions: 2 interactions with chain B, 5 interactions with chain V, 2 interactions with chain A, 1 interactions with chain T Hydrogen bonds: B:S.31, B:G.32, V:R.15 Hydrophobic interactions: V:V.18, V:A.19, A:Y.223, A:Y.223 Salt bridges: V:R.14, V:R.15, T:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tani, K. et al., A previously unrecognized membrane protein in the Rhodobacter sphaeroides LH1-RC photocomplex. Nat Commun (2021)

Release Date

2021-11-10

Peptides

Photosynthetic reaction center L subunit: A
Reaction center protein M chain: B
Reaction center protein H chain: C
Light-harvesting protein B-875 alpha chain: DFHJLNPRTVXZ13
Antenna pigment protein beta chain: EGIKMOQSUWY024
PufX: 5
protein-U: 6

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
M

C
H

D
A

F
D

H
F

J
I

L
K

N
O

P
Q

R
S

T
V

V
Y

X
1

Z
3

1
5

3
7

E
B

G
E

I
G

K
J

M
N

O
P

Q
R

S
T

U
W

W
Z

Y
2

0
4

2
6

4
8

5
X

6
U

Membrane

We predict this structure to be a membrane protein.
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Photosynthetic reaction center L subunit

Reaction center protein M chain

Reaction center protein H chain

Light-harvesting protein B-875 alpha chain

Antenna pigment protein beta chain

PufX

protein-U

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