SMTL ID : 7f8l.1

Crystal structure of Bat coronavirus RaTG13 ORF8 accessory protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.20, D.21 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:D.21, H2O.4, H2O.5 CA.2: 2 residues within 4Å: Chain A: D.21, S.29 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.21, H2O.1, H2O.1, H2O.5, H2O.5 CA.3: 3 residues within 4Å: Chain B: D.21, I.25, F.27 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.21, H2O.7, H2O.8, H2O.9 CA.4: 2 residues within 4Å: Chain B: D.20, D.21 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.20, B:D.21, H2O.6, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Crystal Structures of Bat and Human Coronavirus ORF8 Protein Ig-Like Domain Provide Insights Into the Diversity of Immune Responses. Front Immunol (2021)

Release Date

2022-01-19

Peptides

Nonstructural protein NS8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nonstructural protein NS8