SMTL ID : 7jmk.1 (1 other biounit)

GTP-specific succinyl-CoA synthetase complexed with Mg-GDP in space group P32

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 22 residues within 4Å: Chain A: H.258 Chain B: Q.20, V.44, K.46, G.52, G.53, R.54, G.55, V.67, L.69, A.108, L.109, D.110, I.111, E.114, V.138, N.206, P.207, F.219, D.220, K.222 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Q.20, B:G.53, B:R.54, B:G.55, B:L.109, B:L.109, B:L.109, B:E.114, B:D.220 Salt bridges: B:K.46, B:R.54, B:R.54, B:K.222

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain B: N.206, P.207, D.220, K.222 Ligands: GDP.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:N.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, J. et al., Second distinct conformation of the phosphohistidine loop in succinyl-CoA synthetase. Acta Crystallogr.,Sect.D (2021)

Release Date

2021-03-10

Peptides

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial: A
Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial

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