SMTL ID : 7jx6.2 (1 other biounit)

STRUCTURE OF THE SARS-CoV-2 ORF8 ENCODED ACCESSORY PROTEIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

homo-tetramer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: D.18, P.19, C.20, I.22 Chain C: P.21 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Water bridges: C:I.22, A:I.22, A:I.22 NA.2: 2 residues within 4Å: Chain A: E.75, R.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.75, A:R.98 NA.3: 2 residues within 4Å: Chain A: D.90, F.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.90 NA.4: 4 residues within 4Å: Chain B: Q.1, E.2, H.95, D.96 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.1, B:D.96 Water bridges: B:E.2 NA.5: 5 residues within 4Å: Chain A: P.21 Chain C: D.18, P.19, C.20, I.22 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:C.20 Water bridges: C:I.22, C:I.22, A:I.22 NA.6: 2 residues within 4Å: Chain C: E.75, R.98 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.98 NA.7: 2 residues within 4Å: Chain C: D.90, F.91 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:F.91 NA.8: 4 residues within 4Å: Chain D: Q.1, E.2, H.95, D.96 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:Q.1, D:Q.1, D:D.96 Water bridges: D:E.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nelson, C.A. et al., Crystal Structure of the SARS-CoV-2 ORF8 Protein. To Be Published

Release Date

2020-09-23

Peptides

ORF8 protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

ORF8 protein

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