SMTL ID : 7k6s.1

Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to Compound 4 (SKT1174)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x VYM: (7-amino-3,4-dihydroquinolin-1(2H)-yl)(cyclopropyl)methanone(Non-covalent)

VYM.1: 10 residues within 4Å: Chain A: P.37, F.38, V.42, D.46, A.47, Y.50, C.89, Y.92, N.93, F.99 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.38, A:F.38, A:V.42, A:D.46, A:A.47, A:Y.92, A:F.99, A:F.99 Hydrogen bonds: A:P.37, A:N.93 Water bridges: A:D.46 pi-Stacking: A:F.99

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.23, R.27, E.64, Q.68 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.28, F.109, K.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.113

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: A.31 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ycas, P.D. et al., New inhibitors for the BPTF bromodomain enabled by structural biology and biophysical assay development. Org.Biomol.Chem. (2020)

Release Date

2020-12-09

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleosome-remodeling factor subunit BPTF

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