SMTL ID : 7kc7.1

Biotin Carboxylase domain of Thermophilic 2-Oxoglutarate Carboxylase bound to ADP without Magnesium with disordered phosphate tail

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: K.249, R.304, Q.306, V.307, E.308, R.350 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.306, A:V.307 Salt bridges: A:K.249, A:R.304, A:R.350 PO4.3: 6 residues within 4Å: Chain B: K.249, R.304, Q.306, V.307, E.308, R.350 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.306, B:V.307 Salt bridges: B:K.249, B:R.304, B:R.350

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 10 residues within 4Å: Chain A: V.143, L.168, K.170, E.212, K.213, Y.214, I.215, P.218, I.289, I.299 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.170, A:E.212, A:I.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buhrman, G. et al., Structure, Function, and Thermal Adaptation of the Biotin Carboxylase Domain Dimer from Hydrogenobacter thermophilus 2-Oxoglutarate Carboxylase. Biochemistry (2021)

Release Date

2021-01-27

Peptides

2-oxoglutarate carboxylase small subunit: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-oxoglutarate carboxylase small subunit