SMTL ID : 7ks4.1

Thermus Phage P74-26 Large Terminase ATPase domain with partially bound ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: H.24, H.25 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.25 Salt bridges: A:H.25 SO4.2: 4 residues within 4Å: Chain A: Q.104, R.105, R.106, R.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.106, A:R.107 Salt bridges: A:R.106, A:R.107 SO4.3: 4 residues within 4Å: Chain A: R.200, T.215, H.216, P.217 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.215 Salt bridges: A:R.200 SO4.4: 3 residues within 4Å: Chain A: R.117, G.123, K.125 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.117, A:R.117, A:R.117 Salt bridges: A:R.117, A:K.125 SO4.5: 1 residues within 4Å: Chain A: N.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.209, A:N.209, A:N.209 SO4.6: 7 residues within 4Å: Chain A: L.9, R.10, S.33, T.34, A.35, R.38, W.178 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.33 Water bridges: A:R.38, A:R.38 Salt bridges: A:R.10, A:R.38 SO4.7: 3 residues within 4Å: Chain A: R.44, R.240, Y.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.253 Salt bridges: A:R.44, A:R.240

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.8: 15 residues within 4Å: Chain A: Y.21, K.22, P.23, H.24, Q.27, G.43, R.44, Q.45, S.46, G.47, K.48, S.49, E.50, R.84 Ligands: MG.9 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.22, A:H.24, A:Q.27, A:G.43, A:Q.45, A:S.46, A:G.47, A:K.48, A:S.49, A:E.50 Water bridges: A:K.22, A:K.22, A:H.24, A:S.46 Salt bridges: A:K.48, A:R.84

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 4 residues within 4Å: Chain A: K.48, S.49, D.154 Ligands: ADP.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pajak, J. et al., Viral packaging ATPases utilize a glutamate switch to couple ATPase activity and DNA translocation. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-05-05

Peptides

Phage terminase large subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phage terminase large subunit

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