SMTL ID : 7la1.1 (1 other biounit)

Crystal structure of phosphoglycerate kinase from Mycobacterium avium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.134, D.135, D.136 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.136, A:D.136 Water bridges: A:D.135, A:D.136, A:A.137 EDO.2: 6 residues within 4Å: Chain A: G.210, S.211, G.234, G.235, G.332, V.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.210, A:G.210, A:G.235 Water bridges: A:G.304 EDO.3: 7 residues within 4Å: Chain A: R.70, P.71, R.126, D.128, A.129, E.131, T.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.71, A:D.128, A:E.131, A:T.132 Water bridges: A:T.132 EDO.4: 5 residues within 4Å: Chain A: A.351, T.354, G.355, S.379, G.380 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.355 EDO.5: 6 residues within 4Å: Chain A: N.27, R.44 Chain B: L.30, D.31, S.32, D.33 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.32, B:S.32, B:D.33, A:N.27, A:R.44 EDO.6: 7 residues within 4Å: Chain B: W.327, N.328, G.329, V.362, G.363, A.368, V.371 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.328, B:G.329 EDO.7: 4 residues within 4Å: Chain B: S.320, A.322, E.323, K.356 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.321, B:K.356 Water bridges: B:A.322, B:A.358 EDO.8: 3 residues within 4Å: Chain B: G.69, R.70, L.79 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.70, B:R.70 Water bridges: B:S.32, B:S.32 EDO.9: 1 residues within 4Å: Chain B: L.149 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.149 Water bridges: B:G.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bolejack, M.J. et al., Crystal structure of phosphoglycerate kinase from Mycobacterium avium. to be published

Release Date

2021-03-03

Peptides

Phosphoglycerate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphoglycerate kinase

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