SMTL ID : 7le6.1

HIV-1 Protease WT (NL4-3) in Complex with UMass10

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

1 x A61: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(1S,2R)-3-[(1,3-benzothiazol-6-ylsulfonyl)(2-ethylbutyl)amino]-1-benzyl-2-hydroxypropyl}carbamate(Non-covalent)

A61.1: 32 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, K.45, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, T.80, P.81, V.82, I.84 21 PLIP interactions: 8 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:P.81, B:I.84, A:A.28, A:V.32, A:I.50, A:P.81, A:V.82, A:I.84 Hydrogen bonds: B:G.27, B:G.27, B:D.29, B:D.30, A:R.8, A:D.25, A:D.30, A:D.30 Water bridges: B:I.50, A:D.29, A:I.50 Salt bridges: B:D.25, A:D.25

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: K.7, R.8, L.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.8 SO4.3: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.37, B:N.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease Inhibitors with a P1 Phosphonate Modification Maintain Potency against Drug Resistant Variants by Increased van der Waals Contacts with Flaps Residues. To Be Published

Release Date

2022-01-26

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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