SMTL ID : 7le9.1

HIV-1 Protease WT (NL4-3) in Complex with PD5 (LR4-22)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.7, R.8, L.10 Chain B: R.87 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.8 Water bridges: B:R.87, B:R.87

1 x XUP: diethyl [(4-{(2S,3R)-4-{[(1,3-benzothiazol-6-yl)sulfonyl](2-methylpropyl)amino}-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxybutyl}phenoxy)methyl]phosphonate(Non-covalent)

XUP.2: 31 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, G.52, F.53, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 22 PLIP interactions: 12 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.23, A:F.53, A:V.82, B:A.28, B:V.32, B:P.81, B:P.81, B:V.82 Hydrogen bonds: A:G.27, A:G.27, A:G.27, A:D.29, A:D.30, A:D.30, B:D.30, B:D.30 Water bridges: A:G.48, A:I.50, B:D.29, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease Inhibitors with a P1 Phosphonate Modification Maintain Potency against Drug Resistant Variants by Increased van der Waals Contacts with Flaps Residues. To Be Published

Release Date

2022-01-26

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

Related Entries With Identical Sequence