- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALA: ALANINE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.2: 7 residues within 4Å:- Chain A: A.22, V.23, G.24, N.27, T.254, N.286
- Ligands: ALA.1
5 PLIP interactions:1 Ligand-Ligand interactions, 4 interactions with chain A- Hydrogen bonds: A.1, A:G.24, A:N.27, A:N.286, A:N.286
NA.3: 6 residues within 4Å:- Chain A: G.20, V.23, G.24, A.351, T.354, S.355
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.20
NA.10: 7 residues within 4Å:- Chain B: A.22, V.23, G.24, N.27, T.254, N.286
- Ligands: ALA.9
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: B:G.24, B:N.27, B:T.254, B:T.254, B:N.286, A.9
NA.11: 6 residues within 4Å:- Chain B: G.20, V.23, G.24, A.351, T.354, S.355
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.354, B:T.354
- 10 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.4: 3 residues within 4Å:- Chain A: P.445, R.446, Y.448
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.448
- Hydrogen bonds: A:R.446
- Water bridges: A:I.447
BOG.5: 3 residues within 4Å:- Chain A: L.166, F.167, I.170
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.167, A:F.167, A:I.170
- Water bridges: A:L.166
BOG.6: 6 residues within 4Å:- Chain A: P.164, L.166, Y.169, H.391, F.395
- Ligands: BOG.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.169
- Hydrogen bonds: A:P.164
- Water bridges: A:L.166
BOG.7: 8 residues within 4Å:- Chain A: K.163, H.391, L.392, F.395
- Chain B: W.484, F.488
- Ligands: BOG.6, BOG.8
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.488, B:F.488, A:L.392, A:F.395, A:F.395
- Hydrogen bonds: A:K.163
BOG.8: 8 residues within 4Å:- Chain A: E.159, I.161, F.395
- Chain B: T.479, H.480, W.481, W.484
- Ligands: BOG.7
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:I.161, A:F.395, B:W.481
- Hydrogen bonds: A:E.159, B:H.480, B:W.484
- Water bridges: B:W.481
BOG.12: 3 residues within 4Å:- Chain B: P.445, R.446, Y.448
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.448
- Hydrogen bonds: B:R.446
- Water bridges: B:I.447
BOG.13: 3 residues within 4Å:- Chain B: L.166, F.167, I.170
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.167, B:F.167, B:I.170
- Water bridges: B:L.166
BOG.14: 6 residues within 4Å:- Chain B: P.164, L.166, Y.169, H.391, F.395
- Ligands: BOG.15
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.169
- Hydrogen bonds: B:P.164
- Water bridges: B:L.166
BOG.15: 8 residues within 4Å:- Chain A: W.484, F.488
- Chain B: K.163, H.391, L.392, F.395
- Ligands: BOG.14, BOG.16
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.392, B:F.395, B:F.395, A:F.488, A:F.488
- Hydrogen bonds: B:K.163
BOG.16: 8 residues within 4Å:- Chain A: T.479, H.480, W.481, W.484
- Chain B: E.159, I.161, F.395
- Ligands: BOG.15
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:W.481, B:I.161, B:F.395
- Hydrogen bonds: A:H.480, A:W.484, B:E.159
- Water bridges: A:W.481
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aguilar, J.I. et al., Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia. Elife (2021)
- Release Date
- 2021-05-19
- Peptides
- Na(+):neurotransmitter symporter (Snf family): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.14 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALA: ALANINE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 10 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aguilar, J.I. et al., Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia. Elife (2021)
- Release Date
- 2021-05-19
- Peptides
- Na(+):neurotransmitter symporter (Snf family): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A - Membrane
-
We predict this structure to be a membrane protein.