SMTL ID : 7m33.1

The structure of Bacillus subtilis BmrCD in the inward-facing conformation bound to Hoechst-33342 and ATP

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: P.128, E.132, Y.368, S.370, K.394, T.395, G.396, S.397, G.398, K.399, T.400, T.401, K.404, Y.410, Q.441, D.521, Q.522 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.370, A:S.370, A:G.396, A:S.397, A:G.398, A:K.399, A:T.400, A:T.400, A:T.400, A:T.401, A:T.401, A:K.404, A:Y.410, A:Q.522, A:Q.522, A:Q.522 Salt bridges: A:K.399, A:K.399 pi-Stacking: A:Y.368, A:Y.368 ATP.4: 12 residues within 4Å: Chain B: D.202, Y.439, Q.440, V.445, S.467, G.468, K.469, S.470, S.471, I.472, Q.511, Q.592 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:D.202, B:S.467, B:S.467, B:K.469, B:S.470, B:S.470, B:S.470, B:S.471, B:S.471, B:I.472, B:Q.592

2 x HT1: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE(Non-covalent)

HT1.2: 19 residues within 4Å: Chain A: L.152, F.156, F.267, E.268, V.271, K.272, V.275, Y.279, I.311, W.312, F.315, E.319, V.323, R.326 Chain B: E.32, Y.237, R.381, Q.384 Ligands: HT1.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.311, A:F.315 pi-Cation interactions: A:F.156 HT1.3: 18 residues within 4Å: Chain A: L.48, V.51, N.52, E.55, W.100, F.105, A.108, N.109, S.151, L.152, F.156, L.159, D.163, F.167, W.312 Chain B: H.338, N.342 Ligands: HT1.2 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.105, A:L.152 Salt bridges: A:E.55, A:D.163 pi-Stacking: A:W.312, A:W.312, A:W.312, B:H.338 pi-Cation interactions: A:F.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thaker, T.M. et al., Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter. Nat.Chem.Biol. (2022)

Release Date

2022-01-05

Peptides

Probable multidrug resistance ABC transporter ATP-binding/permease protein YheI: A
Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Membrane

We predict this structure to be a membrane protein.
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Probable multidrug resistance ABC transporter ATP-binding/permease protein YheI

Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH

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