SMTL ID : 7m9k.1

HIV-1 Protease WT (NL4-3) in Complex with LR3-48

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain B: Q.18, M.36, N.37 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.37, B:N.37 Water bridges: B:Q.18 SO4.2: 3 residues within 4Å: Chain B: G.68, H.69, K.70 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.70 Water bridges: B:G.68, B:H.69 SO4.3: 2 residues within 4Å: Chain B: P.1, H.69 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.1 Water bridges: B:H.69, B:H.69 Salt bridges: B:H.69 SO4.4: 3 residues within 4Å: Chain B: K.7, R.8, L.10 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:R.87, A:R.87, B:R.8 Hydrogen bonds: B:R.8 Salt bridges: B:R.8

1 x YWP: diethyl [(4-{(2S,3R)-2-[({[(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl]oxy}carbonyl)amino]-3-hydroxy-4-[{4-[(1R)-1-hydroxyethyl]benzene-1-sulfonyl}(2-methylpropyl)amino]butyl}phenoxy)methyl]phosphonate(Non-covalent)

YWP.5: 33 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, T.31, V.32, I.47, G.48, G.49, I.50, L.76, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, G.52, F.53, P.81, V.82, I.84 25 PLIP interactions: 15 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:A.28, A:D.30, A:I.47, A:L.76, A:P.81, A:P.81, A:I.84, B:F.53, B:V.82 Hydrogen bonds: A:D.29, A:D.30, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30, B:D.30 Water bridges: A:R.8, A:D.29, A:D.29, A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lockbaum, G.J. et al., HIV-1 Protease in Complex with ligands. To Be Published

Release Date

2022-04-20

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Protease

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