- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain A: E.768, Q.771, N.794, D.797, R.834
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.768, A:D.797, H2O.1, H2O.1
CA.3: 5 residues within 4Å:- Chain A: E.212, C.324, D.333, D.336, E.337
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.212, A:D.333, A:D.336, A:E.337, A:E.337
CA.7: 5 residues within 4Å:- Chain B: E.768, Q.771, N.794, D.797, R.834
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.768, B:D.797, H2O.1, H2O.1
CA.8: 5 residues within 4Å:- Chain B: E.212, C.324, D.333, D.336, E.337
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.212, B:D.333, B:D.336, B:E.337, B:E.337
CA.12: 5 residues within 4Å:- Chain C: E.768, Q.771, N.794, D.797, R.834
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.768, C:D.797, H2O.1, H2O.1
CA.13: 5 residues within 4Å:- Chain C: E.212, C.324, D.333, D.336, E.337
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.212, C:D.333, C:D.336, C:E.337, C:E.337
CA.18: 5 residues within 4Å:- Chain D: E.768, Q.771, N.794, D.797, R.834
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.768, D:D.797, H2O.1, H2O.1
CA.19: 5 residues within 4Å:- Chain D: E.212, C.324, D.333, D.336, E.337
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.212, D:D.333, D:D.336, D:E.337, D:E.337
- 4 x YUV: (25R)-14beta,17beta-spirost-5-en-3beta-ol(Non-covalent)
YUV.4: 2 residues within 4Å:- Chain A: F.892
- Ligands: YUY.16
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.892, A:F.892
YUV.9: 2 residues within 4Å:- Chain B: F.892
- Ligands: YUY.5
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.892, B:F.892
YUV.14: 2 residues within 4Å:- Chain C: F.892
- Ligands: YUY.10
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.892, C:F.892
YUV.20: 2 residues within 4Å:- Chain D: F.892
- Ligands: YUY.15
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:F.892, D:F.892
- 4 x YUY: (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
YUY.5: 17 residues within 4Å:- Chain A: A.914, A.915, M.917, W.944, I.947, L.948
- Chain B: S.867, L.870, R.887, D.889, W.890, F.892, R.893, L.896, Y.897, Y.900
- Ligands: YUV.9
12 PLIP interactions:5 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:W.944, A:I.947, A:L.948, B:F.892, B:L.896, B:Y.897, B:Y.900
- Hydrogen bonds: A:A.915, A:M.917, B:D.889, B:D.889, B:W.890
YUY.10: 17 residues within 4Å:- Chain B: A.914, A.915, M.917, W.944, I.947, L.948
- Chain C: S.867, L.870, R.887, D.889, W.890, F.892, R.893, L.896, Y.897, Y.900
- Ligands: YUV.14
12 PLIP interactions:7 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:F.892, C:L.896, C:Y.897, C:Y.900, B:W.944, B:I.947, B:L.948
- Hydrogen bonds: C:D.889, C:D.889, C:W.890, B:A.915, B:M.917
YUY.15: 17 residues within 4Å:- Chain C: A.914, A.915, M.917, W.944, I.947, L.948
- Chain D: S.867, L.870, R.887, D.889, W.890, F.892, R.893, L.896, Y.897, Y.900
- Ligands: YUV.20
12 PLIP interactions:5 interactions with chain C, 7 interactions with chain D- Hydrophobic interactions: C:W.944, C:I.947, C:L.948, D:F.892, D:L.896, D:Y.897, D:Y.900
- Hydrogen bonds: C:A.915, C:M.917, D:D.889, D:D.889, D:W.890
YUY.16: 17 residues within 4Å:- Chain A: S.867, L.870, R.887, D.889, W.890, F.892, R.893, L.896, Y.897, Y.900
- Chain D: A.914, A.915, M.917, W.944, I.947, L.948
- Ligands: YUV.4
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain D- Hydrophobic interactions: A:F.892, A:L.896, A:Y.897, A:Y.900, D:W.944, D:I.947, D:L.948
- Hydrogen bonds: A:D.889, A:D.889, A:W.890, D:A.915, D:M.917
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruan, Z. et al., Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition. Nat.Struct.Mol.Biol. (2021)
- Release Date
- 2021-07-07
- Peptides
- Transient receptor potential melastatin 5: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x YUV: (25R)-14beta,17beta-spirost-5-en-3beta-ol(Non-covalent)
- 4 x YUY: (2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruan, Z. et al., Structures of the TRPM5 channel elucidate mechanisms of activation and inhibition. Nat.Struct.Mol.Biol. (2021)
- Release Date
- 2021-07-07
- Peptides
- Transient receptor potential melastatin 5: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.