- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.2: 10 residues within 4Å:- Chain A: Y.99, R.104, K.196, E.322, S.323, L.324, R.358
- Chain C: Y.45, R.47, N.225
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:R.104, A:R.104, A:E.322, A:S.323, A:L.324, C:T.48, C:T.48, C:N.225
- Salt bridges: A:E.322, A:R.358
EPE.12: 10 residues within 4Å:- Chain B: Y.99, R.104, K.196, E.322, S.323, L.324, R.358
- Chain D: Y.45, R.47, N.225
9 PLIP interactions:2 interactions with chain D, 7 interactions with chain B- Hydrogen bonds: D:T.48, D:N.225, B:Y.99, B:R.104, B:R.104, B:S.323, B:L.324
- Salt bridges: B:E.322, B:R.358
EPE.22: 10 residues within 4Å:- Chain A: Y.45, R.47, N.225
- Chain C: Y.99, R.104, K.196, E.322, S.323, L.324, R.358
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:R.104, C:R.104, C:E.322, C:S.323, C:L.324, A:T.48, A:T.48, A:N.225
- Salt bridges: C:E.322, C:R.358
EPE.32: 10 residues within 4Å:- Chain B: Y.45, R.47, N.225
- Chain D: Y.99, R.104, K.196, E.322, S.323, L.324, R.358
9 PLIP interactions:7 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:Y.99, D:R.104, D:R.104, D:S.323, D:L.324, B:T.48, B:N.225
- Salt bridges: D:E.322, D:R.358
- 12 x NA: SODIUM ION(Non-functional Binders)
NA.3: 0 residues within 4Å:- (No contacts)
3 PLIP interactions:3 interactions with chain A- Water bridges: A:G.186, A:I.187, A:D.188
NA.4: 2 residues within 4Å:- Chain A: H.9, G.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.9
NA.5: 3 residues within 4Å:- Chain A: I.312, T.315, Y.318
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.315, A:T.315
- Water bridges: A:L.320
NA.13: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain B- Water bridges: B:I.187, B:D.188
NA.14: 2 residues within 4Å:- Chain B: H.9, G.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.11
NA.15: 3 residues within 4Å:- Chain B: I.312, T.315, Y.318
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.315, B:T.315, B:T.315
- Water bridges: B:L.320
NA.23: 0 residues within 4Å:- (No contacts)
1 PLIP interactions:1 interactions with chain C- Water bridges: C:D.188
NA.24: 2 residues within 4Å:- Chain C: H.9, G.11
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.9
NA.25: 3 residues within 4Å:- Chain C: I.312, T.315, Y.318
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.315, C:Y.318
- Water bridges: C:L.320
NA.33: 0 residues within 4Å:- (No contacts)
3 PLIP interactions:3 interactions with chain D- Water bridges: D:L.183, D:I.187, D:D.188
NA.34: 2 residues within 4Å:- Chain D: H.9, G.11
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:H.9
NA.35: 3 residues within 4Å:- Chain D: I.312, T.315, Y.318
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.315, D:T.315, D:T.315
- Water bridges: D:L.320
- 20 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 6 residues within 4Å:- Chain A: G.165, L.166, I.167, D.188, L.216, R.219
Ligand excluded by PLIPGOL.7: 4 residues within 4Å:- Chain A: G.100, Y.103, T.338, H.339
Ligand excluded by PLIPGOL.8: 3 residues within 4Å:- Chain A: L.85, R.219
- Chain C: R.112
Ligand excluded by PLIPGOL.9: 5 residues within 4Å:- Chain A: T.123, H.124, T.125, K.156, N.283
Ligand excluded by PLIPGOL.10: 5 residues within 4Å:- Chain A: Q.41, G.42, Y.43, A.49, S.54
Ligand excluded by PLIPGOL.16: 6 residues within 4Å:- Chain B: G.165, L.166, I.167, D.188, L.216, R.219
Ligand excluded by PLIPGOL.17: 4 residues within 4Å:- Chain B: G.100, Y.103, T.338, H.339
Ligand excluded by PLIPGOL.18: 3 residues within 4Å:- Chain B: L.85, R.219
- Chain D: R.112
Ligand excluded by PLIPGOL.19: 5 residues within 4Å:- Chain B: T.123, H.124, T.125, K.156, N.283
Ligand excluded by PLIPGOL.20: 5 residues within 4Å:- Chain B: Q.41, G.42, Y.43, A.49, S.54
Ligand excluded by PLIPGOL.26: 6 residues within 4Å:- Chain C: G.165, L.166, I.167, D.188, L.216, R.219
Ligand excluded by PLIPGOL.27: 4 residues within 4Å:- Chain C: G.100, Y.103, T.338, H.339
Ligand excluded by PLIPGOL.28: 3 residues within 4Å:- Chain A: R.112
- Chain C: L.85, R.219
Ligand excluded by PLIPGOL.29: 5 residues within 4Å:- Chain C: T.123, H.124, T.125, K.156, N.283
Ligand excluded by PLIPGOL.30: 5 residues within 4Å:- Chain C: Q.41, G.42, Y.43, A.49, S.54
Ligand excluded by PLIPGOL.36: 6 residues within 4Å:- Chain D: G.165, L.166, I.167, D.188, L.216, R.219
Ligand excluded by PLIPGOL.37: 4 residues within 4Å:- Chain D: G.100, Y.103, T.338, H.339
Ligand excluded by PLIPGOL.38: 3 residues within 4Å:- Chain B: R.112
- Chain D: L.85, R.219
Ligand excluded by PLIPGOL.39: 5 residues within 4Å:- Chain D: T.123, H.124, T.125, K.156, N.283
Ligand excluded by PLIPGOL.40: 5 residues within 4Å:- Chain D: Q.41, G.42, Y.43, A.49, S.54
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shatalin, K. et al., Inhibitors of bacterial H 2 S biogenesis targeting antibiotic resistance and tolerance. Science (2021)
- Release Date
- 2021-06-23
- Peptides
- Bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
HC
HD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 12 x NA: SODIUM ION(Non-functional Binders)
- 20 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shatalin, K. et al., Inhibitors of bacterial H 2 S biogenesis targeting antibiotic resistance and tolerance. Science (2021)
- Release Date
- 2021-06-23
- Peptides
- Bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
HB
HC
HD
H