SMTL ID : 7mio.1

Mouse TRPV3 in cNW11 nanodiscs, open state at 42 degrees Celsius

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

28 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.1: 13 residues within 4Å: Chain A: Y.439, M.440, S.444, F.447, W.493, E.501, F.522, H.523, F.526, Y.564, Y.565, F.703, M.706 Ligand excluded by PLIP POV.2: 12 residues within 4Å: Chain A: L.513, Q.514, S.515, I.516, W.521, I.583, L.584, H.585, K.589, F.592 Chain B: S.571 Ligands: POV.10 Ligand excluded by PLIP POV.3: 10 residues within 4Å: Chain A: Y.650, P.651, I.652, F.656 Chain B: W.521, L.532, L.553, L.557, A.560 Ligands: POV.4 Ligand excluded by PLIP POV.4: 11 residues within 4Å: Chain A: I.652, L.655, F.656, T.660, I.663 Chain B: L.588, F.590, S.626, F.633 Ligands: POV.3, POV.16 Ligand excluded by PLIP POV.5: 12 residues within 4Å: Chain A: T.456, Y.460, Y.461 Chain D: F.592, I.595, L.599, S.624, F.625, S.626 Ligands: POV.6, POV.7, POV.22 Ligand excluded by PLIP POV.6: 18 residues within 4Å: Chain A: H.430, W.433, K.434, K.438, Y.439, F.441, F.442, L.443, F.445, F.449, M.562, Y.565, T.566, F.569, R.696 Chain D: L.596 Ligands: POV.5, POV.29 Ligand excluded by PLIP POV.7: 7 residues within 4Å: Chain A: F.450, I.453, L.457, Y.461 Chain D: I.595, L.599 Ligands: POV.5 Ligand excluded by PLIP POV.9: 12 residues within 4Å: Chain A: F.592, I.595, L.599, S.624, F.625, S.626 Chain B: T.456, Y.460, Y.461 Ligands: POV.10, POV.11, POV.24 Ligand excluded by PLIP POV.10: 18 residues within 4Å: Chain A: L.596 Chain B: H.430, W.433, K.434, K.438, Y.439, F.441, F.442, L.443, F.445, F.449, M.562, Y.565, T.566, F.569, R.696 Ligands: POV.2, POV.9 Ligand excluded by PLIP POV.11: 7 residues within 4Å: Chain A: I.595, L.599 Chain B: F.450, I.453, L.457, Y.461 Ligands: POV.9 Ligand excluded by PLIP POV.12: 13 residues within 4Å: Chain B: Y.439, M.440, S.444, F.447, W.493, E.501, F.522, H.523, F.526, Y.564, Y.565, F.703, M.706 Ligand excluded by PLIP POV.13: 12 residues within 4Å: Chain B: L.513, Q.514, S.515, I.516, W.521, I.583, L.584, H.585, K.589, F.592 Chain C: S.571 Ligands: POV.17 Ligand excluded by PLIP POV.14: 10 residues within 4Å: Chain B: Y.650, P.651, I.652, F.656 Chain C: W.521, L.532, L.553, L.557, A.560 Ligands: POV.15 Ligand excluded by PLIP POV.15: 11 residues within 4Å: Chain B: I.652, L.655, F.656, T.660, I.663 Chain C: L.588, F.590, S.626, F.633 Ligands: POV.14, POV.25 Ligand excluded by PLIP POV.16: 11 residues within 4Å: Chain B: F.592, I.595, L.599, S.624, F.625, S.626 Chain C: Y.460, Y.461 Ligands: POV.4, POV.17, POV.18 Ligand excluded by PLIP POV.17: 17 residues within 4Å: Chain B: L.596 Chain C: H.430, K.434, K.438, Y.439, F.441, F.442, L.443, F.445, F.449, M.562, Y.565, T.566, F.569, R.696 Ligands: POV.13, POV.16 Ligand excluded by PLIP POV.18: 7 residues within 4Å: Chain B: I.595, L.599 Chain C: F.450, I.453, L.457, Y.461 Ligands: POV.16 Ligand excluded by PLIP POV.19: 13 residues within 4Å: Chain C: Y.439, M.440, S.444, F.447, W.493, E.501, F.522, H.523, F.526, Y.564, Y.565, F.703, M.706 Ligand excluded by PLIP POV.20: 12 residues within 4Å: Chain C: L.513, Q.514, S.515, I.516, W.521, I.583, L.584, H.585, K.589, F.592 Chain D: S.571 Ligands: POV.26 Ligand excluded by PLIP POV.21: 10 residues within 4Å: Chain C: Y.650, P.651, I.652, F.656 Chain D: W.521, L.532, L.553, L.557, A.560 Ligands: POV.22 Ligand excluded by PLIP POV.22: 11 residues within 4Å: Chain C: I.652, L.655, F.656, T.660, I.663 Chain D: L.588, F.590, S.626, F.633 Ligands: POV.5, POV.21 Ligand excluded by PLIP POV.23: 10 residues within 4Å: Chain A: W.521, L.532, L.553, L.557, A.560 Chain D: Y.650, P.651, I.652, F.656 Ligands: POV.24 Ligand excluded by PLIP POV.24: 11 residues within 4Å: Chain A: L.588, F.590, S.626, F.633 Chain D: I.652, L.655, F.656, T.660, I.663 Ligands: POV.9, POV.23 Ligand excluded by PLIP POV.25: 11 residues within 4Å: Chain C: F.592, I.595, L.599, S.624, F.625, S.626 Chain D: Y.460, Y.461 Ligands: POV.15, POV.26, POV.27 Ligand excluded by PLIP POV.26: 18 residues within 4Å: Chain C: L.596 Chain D: H.430, W.433, K.434, K.438, Y.439, F.441, F.442, L.443, F.445, F.449, M.562, Y.565, T.566, F.569, R.696 Ligands: POV.20, POV.25 Ligand excluded by PLIP POV.27: 7 residues within 4Å: Chain C: I.595, L.599 Chain D: F.450, I.453, L.457, Y.461 Ligands: POV.25 Ligand excluded by PLIP POV.28: 13 residues within 4Å: Chain D: Y.439, M.440, S.444, F.447, W.493, E.501, F.522, H.523, F.526, Y.564, Y.565, F.703, M.706 Ligand excluded by PLIP POV.29: 12 residues within 4Å: Chain A: S.571 Chain D: L.513, Q.514, S.515, I.516, W.521, I.583, L.584, H.585, K.589, F.592 Ligands: POV.6 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nadezhdin, K.D. et al., Structural mechanism of heat-induced opening of a temperature-sensitive TRP channel. Nat.Struct.Mol.Biol. (2021)

Release Date

2021-07-21

Peptides

Transient receptor potential cation channel subfamily V member 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Transient receptor potential cation channel subfamily V member 3

Related Entries With Identical Sequence