- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-14-mer
- Ligands
- 25 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 6 residues within 4Å:- Chain A: E.26, V.28, Y.62, R.192
- Chain G: L.48, A.52
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.26
- Salt bridges: A:R.192
ACT.7: 8 residues within 4Å:- Chain B: E.136, A.139, R.140, L.143
- Chain I: E.136, A.139, R.140, L.143
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.136, B:R.140
ACT.11: 8 residues within 4Å:- Chain C: E.136, A.139, R.140, L.143
- Chain J: E.136, A.139, R.140, L.143
No protein-ligand interaction detected (PLIP)ACT.20: 8 residues within 4Å:- Chain F: E.136, A.139, R.140, L.143
- Chain M: E.136, A.139, R.140, L.143
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain F- Hydrogen bonds: M:E.136
- Salt bridges: F:R.140
ACT.24: 3 residues within 4Å:- Chain G: E.26, V.28, Y.60
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:Y.60
- Hydrogen bonds: G:E.26
ACT.38: 8 residues within 4Å:- Chain E: E.136, A.139, R.140, L.143
- Chain L: E.136, A.139, R.140, L.143
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain L- Salt bridges: E:R.140
- Hydrogen bonds: L:R.140
- 14 x ZGV: 4-[(1E)-3-{[(2E,4E,6E,8S)-8-hydroxy-4-methyldeca-2,4,6-trienoyl]amino}-3-oxoprop-1-en-1-yl]azete-1(2H)-carboxylic acid(Covalent)
ZGV.4: 13 residues within 4Å:- Chain A: Q.34, P.66, G.67, G.68, I.70, S.97, M.98, H.122, P.124, L.125, M.149
- Chain G: V.69
- Ligands: MPD.1
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.70
- Hydrogen bonds: A:G.68, A:M.98
ZGV.8: 13 residues within 4Å:- Chain B: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.5
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:I.70
ZGV.10: 12 residues within 4Å:- Chain C: Q.34, P.66, G.67, G.68, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.9
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Q.34, C:P.66, C:G.68, C:M.98
ZGV.15: 13 residues within 4Å:- Chain D: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.12
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:G.68, D:M.98
ZGV.17: 13 residues within 4Å:- Chain E: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.16
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:I.70
- Hydrogen bonds: E:Q.34, E:P.66, E:G.68, E:M.98
ZGV.22: 13 residues within 4Å:- Chain F: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.19
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Q.34, F:G.68, F:M.98
ZGV.25: 13 residues within 4Å:- Chain G: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.23
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:I.70
- Hydrogen bonds: G:G.68, G:M.98
ZGV.27: 12 residues within 4Å:- Chain H: Q.34, P.66, G.67, G.68, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.26
4 PLIP interactions:4 interactions with chain H- Hydrophobic interactions: H:P.66, H:I.70
- Hydrogen bonds: H:G.68, H:M.98
ZGV.30: 13 residues within 4Å:- Chain I: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.29
3 PLIP interactions:3 interactions with chain I- Hydrophobic interactions: I:I.70
- Hydrogen bonds: I:G.68, I:M.98
ZGV.33: 13 residues within 4Å:- Chain J: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.32
3 PLIP interactions:3 interactions with chain J- Hydrophobic interactions: J:P.66
- Hydrogen bonds: J:G.68, J:M.98
ZGV.36: 12 residues within 4Å:- Chain K: Q.34, P.66, G.67, G.68, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.35
3 PLIP interactions:3 interactions with chain K- Hydrogen bonds: K:Q.34, K:G.68, K:M.98
ZGV.40: 13 residues within 4Å:- Chain L: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.39
4 PLIP interactions:4 interactions with chain L- Hydrophobic interactions: L:P.66, L:P.66, L:I.70
- Hydrogen bonds: L:H.122
ZGV.42: 13 residues within 4Å:- Chain M: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.41
4 PLIP interactions:4 interactions with chain M- Hydrophobic interactions: M:P.66, M:I.70
- Hydrogen bonds: M:G.68, M:M.98
ZGV.45: 13 residues within 4Å:- Chain N: Q.34, P.66, G.67, G.68, V.69, I.70, S.97, M.98, H.122, Q.123, P.124, L.125
- Ligands: MPD.43
3 PLIP interactions:3 interactions with chain N- Hydrophobic interactions: N:L.125
- Hydrogen bonds: N:G.68, N:M.98
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Culp, E.J. et al., ClpP inhibitors are produced by a widespread family of bacterial gene clusters. Nat Microbiol (2022)
- Release Date
- 2022-02-02
- Peptides
- ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
N
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-14-mer
- Ligands
- 25 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 14 x ZGV: 4-[(1E)-3-{[(2E,4E,6E,8S)-8-hydroxy-4-methyldeca-2,4,6-trienoyl]amino}-3-oxoprop-1-en-1-yl]azete-1(2H)-carboxylic acid(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Culp, E.J. et al., ClpP inhibitors are produced by a widespread family of bacterial gene clusters. Nat Microbiol (2022)
- Release Date
- 2022-02-02
- Peptides
- ATP-dependent Clp protease proteolytic subunit: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
N