SMTL ID : 7ml3.1

General transcription factor TFIIH (weak binding)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.13, I.15, C.16, C.39, C.42 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.13, A:C.16, A:C.39, A:C.42 ZN.2: 5 residues within 4Å: Chain A: C.34, H.36, C.54, C.59, K.61 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.36, A:C.54, A:C.59 ZN.4: 5 residues within 4Å: Chain E: C.289, C.292, C.294, C.305, C.308 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.289, E:C.292, E:C.305, E:C.308 ZN.5: 4 residues within 4Å: Chain F: C.403, C.406, C.437, C.440 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.403, F:C.406, F:C.437, F:C.440 ZN.6: 4 residues within 4Å: Chain F: C.429, C.432, C.451, C.454 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.429, F:C.432, F:C.451, F:C.454 ZN.7: 4 residues within 4Å: Chain F: C.349, C.352, C.363, C.366 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:C.349, F:C.352, F:C.363 ZN.8: 4 residues within 4Å: Chain F: C.336, C.338, H.339, C.357 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.336, F:C.338, F:H.339, F:C.357

1 x SF4: IRON/SULFUR CLUSTER(Covalent)

SF4.3: 12 residues within 4Å: Chain C: L.114, C.115, L.116, H.117, C.133, M.136, T.137, C.156, Y.158, C.191, Y.193, F.194 4 PLIP interactions: 4 interactions with chain C, pi-Cation interactions: C:F.194 Metal complexes: C:C.115, C:C.133, C:C.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, C. et al., Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell (2022)

Release Date

2022-02-02

Peptides

BJ4_G0050160.mRNA.1.CDS.1: A
RNA polymerase II transcription factor B subunit 2: B
General transcription and DNA repair factor IIH helicase subunit XPD: C
Tfb1: D
General transcription and DNA repair factor IIH subunit TFB4: E
General transcription and DNA repair factor IIH: F
General transcription and DNA repair factor IIH subunit TFB5: G
General transcription and DNA repair factor IIH helicase subunit XPB: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
3

B
2

C
0

D
1

E
4

F
6

G
5

H
7

BJ4_G0050160.mRNA.1.CDS.1

RNA polymerase II transcription factor B subunit 2

General transcription and DNA repair factor IIH helicase subunit XPD

Tfb1

General transcription and DNA repair factor IIH subunit TFB4

General transcription and DNA repair factor IIH

General transcription and DNA repair factor IIH subunit TFB5

General transcription and DNA repair factor IIH helicase subunit XPB

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