SMTL ID : 7mlr.1

X-ray crystal structure of human BRD4(D1) in complex with 2-(4-{5-[6-(3,5-dimethylphenoxy)pyridin-2-yl]-4-methyl-1H-1,2,3-triazol-1- yl}piperidin-1-yl)-N,N-dimethylethan-1-amine (DW34)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94 Water bridges: A:T.62 EDO.2: 3 residues within 4Å: Chain A: N.80, Q.82, E.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.80 EDO.3: 4 residues within 4Å: Chain A: Q.118, K.119, E.122 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.119, A:E.122 EDO.4: 8 residues within 4Å: Chain A: R.17, Q.18, L.22, Q.23, L.26, L.73, N.76, Y.78 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.18, A:N.76 EDO.5: 4 residues within 4Å: Chain A: V.28, T.32, K.119 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.119

1 x ZHS: 2-(4-{5-[6-(3,5-dimethylphenoxy)pyridin-2-yl]-4-methyl-1H-1,2,3-triazol-1-yl}piperidin-1-yl)-N,N-dimethylethan-1-amine(Non-covalent)

ZHS.6: 15 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, D.103, D.104, I.105, M.108 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:Y.98, A:D.104, A:I.105 Hydrogen bonds: A:N.99 Salt bridges: A:D.103

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 5 residues within 4Å: Chain A: K.14, Y.77, Y.78, W.79, E.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.14, A:E.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, H. et al., 4-Methyl-1,2,3-Triazoles as N -Acetyl-Lysine Mimics Afford Potent BET Bromodomain Inhibitors with Improved Selectivity. J.Med.Chem. (2021)

Release Date

2021-07-28

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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