SMTL ID : 7mr8.1

Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-076

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x ZNJ: N-{3-[(2-{3-fluoro-4-[(piperidin-4-yl)carbamoyl]anilino}-5-methylpyrimidin-4-yl)amino]-5-[(2-methylpropane-2-sulfonyl)amino]benzoyl}-L-glutamic acid(Non-covalent)

ZNJ.1: 12 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, K.50, L.51, L.53, N.99, D.104, I.105, M.108 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:D.104, A:I.105, A:I.105 Hydrogen bonds: A:P.41, A:Q.44, A:N.99, A:N.99 Water bridges: A:Y.56 Salt bridges: A:K.50

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: I.85, N.89, L.117, I.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.89 Water bridges: A:Q.82 EDO.3: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, A. et al., Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-076. To Be Published

Release Date

2022-05-11

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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