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SMTL ID : 7n5c.1

6218 TCR in complex with H2Db PA with an engineered TCR-pMHC disulfide bond

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1:

3 residues within 4Å:

Chain E: M.15, K.82, T.83

2 PLIP interactions:

2 interactions with chain E

Hydrogen bonds: E:T.83, E:T.83

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Szeto, C. et al., Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus. Nat Commun (2022)

Release Date

2022-07-20

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B
peptide from Polymerase acidic protein: C
Fusion protein of T cell receptor alpha variable 21-DV12 with T-cell receptor, sp3.4 alpha chain: D
Fusion protein of T cell receptor beta, variable 29 and Human nkt tcr beta chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

peptide from Polymerase acidic protein

Fusion protein of T cell receptor alpha variable 21-DV12 with T-cell receptor, sp3.4 alpha chain

Fusion protein of T cell receptor beta, variable 29 and Human nkt tcr beta chain

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1a9b.1 | 1a9b.2 | 1a9e.1 | 1b0g.1 | 1b0g.2 | 1b0r.1 | 1bd2.1 | 1cg9.1 | 1duy.1 | 1duy.2 | 1duz.1 | 1duz.2 | 1eey.1 | 1eey.2 | 1eez.1 | 1eez.2 | 1efx.1 | 1gzp.1 | 1gzq.1 | 1hhg.1 | 1hhg.2 | 1hhh.1 | 1hhi.1 | 1hhi.2 | 1hhj.1 | 1hhj.2 | 1hhk.1 | 1hhk.2 | 1i1f.1 | 1i1f.2 more...less...

1i1y.1 | 1i1y.2 | 1i4f.1 | 1i7r.1 | 1i7r.2 | 1i7t.1 | 1i7t.2 | 1i7u.1 | 1i7u.2 | 1im3.1 | 1im3.2 | 1im3.3 | 1im3.4 | 1im9.1 | 1jf1.1 | 1jgd.1 | 1jge.1 | 1jht.1 | 1jnj.1 | 1k5n.1 | 1kpr.1 | 1kpr.2 | 1kpr.3 | 1kpr.4 | 1ktl.1 | 1ktl.2 | 1ktl.3 | 1lds.1 | 1lp9.1 | 1lp9.2 | 1mhe.1 | 1of2.1 | 1oga.1 | 1ogt.1 | 1q94.1 | 1q94.2 | 1qew.1 | 1qr1.1 | 1qr1.2 | 1qrn.1 | 1qse.1 | 1qsf.1 | 1qvo.1 | 1qvo.2 | 1s9w.1 | 1s9x.1 | 1s9y.1 | 1sys.1 | 1syv.1 | 1tmc.1 | 1tvb.1 | 1tvb.2 | 1tvh.1 | 1tvh.2 | 1uqs.1 | 1uxs.1 | 1uxw.1 | 1w0v.1 | 1w0w.1 | 1w72.1 | 1w72.2 | 1ydp.1 | 1ydp.2 | 1zt4.1 | 1zt4.2 | 1zt4.3 | 2a83.1 | 2av1.1 | 2av1.2 | 2av7.1 | 2av7.2 | 2bck.1 | 2bck.2 | 2bck.3 | 2bnq.1 | 2bnr.1 | 2bsr.1 | 2bss.1 | 2bst.1 | 2bvo.1 | 2bvp.1 | 2bvq.1 | 2c7u.1 | 2c7u.2 | 2clr.1 | 2clr.2 | 2d31.1 | 2d31.2 | 2d4f.1 | 2dyp.1 | 2esv.1 | 2f74.1 | 2f74.2 | 2git.1 | 2git.2 | 2gj6.1 | 2gt9.1 | 2gt9.2 | 2gtw.1 | 2gtw.2 | 2gtz.1 | 2gtz.2 | 2guo.1 | 2guo.2 | 2j8u.1 | 2j8u.2 | 2jcc.1 | 2jcc.2 | 2uwe.1 | 2uwe.2 | 2v2w.1 | 2v2w.2 | 2v2x.1 | 2v2x.2 | 2vlj.1 | 2vlk.1 | 2vll.1 | 2vll.2 | 2vlr.1 | 2vlr.2 | 2x4n.1 | 2x4n.2 | 2x4o.1 | 2x4o.2 | 2x4p.1 | 2x4p.2 | 2x4q.1 | 2x4q.2 | 2x4r.1 | 2x4r.2 | 2x4s.1 | 2x4s.2 | 2x4t.1 | 2x4t.2 | 2x4u.1 | 2x4u.2 | 2x70.1 | 2x70.2 | 2yxf.1 | 3am8.1 | 3am8.2 | 3b3i.1 | 3b6s.1 | 3bgm.1 | 3bh8.1 | 3bh9.1 | 3bh9.2 | 3bo8.1 | 3bp4.1 | 3bp7.1 | 3bvn.1 | 3bvn.2 | 3bw9.1 | 3bwa.1 | 3bxn.1 | 3bze.1 | 3bze.2 | 3bze.3 | 3bze.4 | 3cdg.1 | 3cdg.2 | 3cii.1 | 3cii.2 | 3czf.1 | 3d18.1 | 3d39.1 | 3d3v.1 | 3dtx.1 | 3dtx.2 | 3ffc.1 | 3ffc.2 | 3ft2.1 | 3ft3.1 | 3ft4.1 | 3giv.1 | 3giv.2 | 3gjf.1 | 3gjf.2 | 3gsn.1 | 3gso.1 | 3gsq.1 | 3gsr.1 | 3gsu.1 | 3gsv.1 | 3gsw.1 | 3gsx.1 | 3h7b.1 | 3h7b.2 | 3h9h.1 | 3h9h.2 | 3h9s.1 | 3hae.1 | 3hae.2 | 3hae.3 | 3hae.4 | 3hcv.1 | 3hg1.1 | 3hpj.1 | 3hpj.2 | 3i6g.1 | 3i6g.2 | 3i6k.1 | 3i6k.2 | 3i6l.1 | 3ixa.1 | 3ixa.2 | 3kla.1 | 3kla.2 | 3kpo.1 | 3kyn.1 | 3kyo.1 | 3kyo.2 | 3lkn.1 | 3lko.1 | 3lkp.1 | 3lkq.1 | 3lkr.1 | 3lks.1 | 3low.1 | 3lv3.1 | 3mgo.1 | 3mgo.2 | 3mgo.3 | 3mgo.4 | 3mgt.1 | 3mgt.2 | 3mgt.3 | 3mgt.4 | 3mr9.1 | 3mrb.1 | 3mrc.1 | 3mrd.1 | 3mre.1 | 3mrf.1 | 3mrg.1 | 3mrh.1 | 3mri.1 | 3mrj.1 | 3mrk.1 | 3mrl.1 | 3mrm.1 | 3mrn.1 | 3mro.1 | 3mrp.1 | 3mrq.1 | 3mrr.1 | 3mv8.1 | 3mv9.1 | 3myj.1 | 3myj.2 | 3nfn.1 | 3o3a.1 | 3o3a.2 | 3o3b.1 | 3o3b.2 | 3o3d.1 | 3o3d.2 | 3o3e.1 | 3o3e.2 | 3ox8.1 | 3ox8.2 | 3oxr.1 | 3oxs.1 | 3pqy.1 | 3pqy.2 | 3pqy.3 | 3pqy.4 | 3pwj.1 | 3pwj.2 | 3pwl.1 | 3pwl.2 | 3pwn.1 | 3pwn.2 | 3pwp.1 | 3qdg.1 | 3qdj.1 | 3qdm.1 | 3qeq.1 | 3qfd.1 | 3qfd.2 | 3qfj.1 | 3qzw.1 | 3qzw.2 | 3rl1.1 | 3rwj.1 | 3sjv.1 | 3sjv.2 | 3sjv.3 | 3sjv.4 | 3skm.1 | 3sko.1 | 3to2.1 | 3utq.1 | 3uts.1 | 3uts.2 | 3utt.1 | 3utt.2 | 3v5d.1 | 3v5d.2 | 3v5h.1 | 3v5h.2 | 3v5k.1 | 3v5k.2 | 3vfm.1 | 3vfr.1 | 3vft.1 | 3vfu.1 | 3vfv.1 | 3vri.1 | 3vrj.1 | 3vxm.1 | 3vxn.1 | 3vxo.1 | 3vxo.2 | 3vxp.1 | 3vxp.2 | 3vxr.1 | 3vxs.1 | 3vxu.1 | 3vxu.2 | 3w0w.1 | 3w39.1 | 3w39.2 | 3wl9.1 | 3wlb.1 | 4e5x.1 | 4e5x.2 | 4eup.1 | 4eup.2 | 4f7m.1 | 4f7m.2 | 4f7p.1 | 4f7t.1 | 4f7t.2 | 4ftv.1 | 4g8g.1 | 4g9f.1 | 4gkn.1 | 4gkn.2 | 4gks.1 | 4gks.2 | 4hkj.1 | 4hkj.2 | 4hkj.3 | 4hkj.4 | 4i4w.1 | 4jfd.1 | 4jfe.1 | 4jff.1 | 4jfo.1 | 4jfo.2 | 4jfp.1 | 4jfp.2 | 4jfq.1 | 4jfq.2 | 4jry.1 | 4k7f.1 | 4k7f.2 | 4l29.1 | 4l29.2 | 4l29.3 | 4l29.4 | 4l29.5 | 4l29.6 | 4l29.7 | 4l29.8 | 4l29.9 | 4l29.10 | 4l29.11 | 4l29.12 | 4l29.13 | 4l29.14 | 4l3e.1 | 4lcy.2 | 4lcy.4 | 4lcy.5 | 4lcy.6 | 4lhu.1 | 4mj5.1 | 4mj6.1 | 4mnq.1 | 4n8v.1 | 4n8v.2 | 4nqv.1 | 4nqv.2 | 4nqv.3 | 4nqv.4 | 4nqv.5 | 4nqv.6 | 4nqx.1 | 4nqx.2 | 4nqx.3 | 4nqx.4 | 4nqx.5 | 4nqx.6 | 4pj5.1 | 4pj5.2 | 4pj9.1 | 4pja.1 | 4pja.2 | 4pjb.1 | 4pjb.2 | 4pjc.1 | 4pjc.2 | 4pjd.1 | 4pjd.2 | 4pje.1 | 4pje.2 | 4pjf.1 | 4pjf.2 | 4pjg.1 | 4pjg.2 | 4pjh.1 | 4pjh.2 | 4pji.1 | 4pji.2 | 4pjx.1 | 4pjx.2 | 4qok.1 | 4qrp.1 | 4qrp.2 | 4qrp.4 | 4qrq.1 | 4qrt.1 | 4u1h.1 | 4u1i.1 | 4u1j.1 | 4u1k.1 | 4u1k.2 | 4u1l.1 | 4u1l.2 | 4u1m.1 | 4u1n.1 | 4u1s.1 | 4u6x.1 | 4u6y.1 | 4uq3.1 | 4uq3.2 | 4wdi.1 | 4wdi.2 | 4wj5.1 | 4wj5.2 | 4wo4.1 | 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5n6b.1 | 5n6b.2 | 5nht.1 | 5nme.1 | 5nme.2 | 5nmf.1 | 5nmf.2 | 5nmg.1 | 5nmg.2 | 5nmk.1 | 5nq1.1 | 5nq1.2 | 5nq3.1 | 5nq3.2 | 5nqk.1 | 5trz.1 | 5ts1.1 | 5ts1.2 | 5ts1.3 | 5ts1.4 | 5txs.1 | 5u1r.1 | 5u1r.2 | 5v5l.1 | 5v5l.2 | 5vgd.1 | 5vge.1 | 5vwh.1 | 5vz5.1 | 5w1v.1 | 5w1v.2 | 5w1v.3 | 5w1v.4 | 5w1w.1 | 5w1w.2 | 5w1w.3 | 5w1w.4 | 5w67.1 | 5w69.1 | 5w69.2 | 5w69.3 | 5w69.4 | 5w6a.1 | 5w6a.2 | 5wer.1 | 5wer.2 | 5wer.3 | 5wer.4 | 5wjl.1 | 5wjl.2 | 5wjl.3 | 5wjn.1 | 5wjn.2 | 5wjn.3 | 5wkf.1 | 5wkf.2 | 5wkh.1 | 5wkh.2 | 5wmn.1 | 5wmn.2 | 5wmq.1 | 5wmr.1 | 5wsh.1 | 5xov.1 | 5xov.2 | 6aee.1 | 6aee.2 | 6am5.1 | 6amt.1 | 6amt.2 | 6amu.1 | 6at9.1 | 6bxq.1 | 6d29.1 | 6d2b.1 | 6d2r.1 | 6d2t.1 | 6d78.1 | 6dkp.1 | 6ei2.1 | 6eqa.1 | 6eqb.1 | 6g3j.1 | 6g3j.2 | 6g3k.1 | 6g3k.2 | 6ggm.1 | 6ggm.2 | 6gh1.1 | 6gh1.2 | 6gh1.3 | 6gh1.4 | 6gh4.1 | 6gh4.2 | 6gh4.3 | 6gh4.4 | 6ghn.1 | 6ghn.2 | 6gl1.1 | 6gl1.2 | 6gl1.3 | 6gl1.4 | 6id4.1 | 6id4.2 | 6iex.1 | 6k60.1 | 6k60.2 | 6m24.1 | 6m2j.1 | 6m2k.1 | 6mpp.1 | 6mt3.1 | 6mt4.1 | 6mt5.1 | 6mt6.1 | 6nca.1 | 6nca.2 | 6nca.3 | 6nca.4 | 6nca.5 | 6nca.6 | 6nca.7 | 6nca.8 | 6nca.9 | 6nca.10 | 6nca.11 | 6nca.12 | 6nca.13 | 6nca.14 | 6nca.15 | 6nca.16 | 6nca.17 | 6nca.18 | 6nca.19 | 6nca.20 | 6npr.1 | 6npr.2 | 6opd.1 | 6p2f.1 | 6p2s.1 | 6p64.1 | 6p64.2 | 6pa1.1 | 6pa1.2 | 6pag.1 | 6ptb.1 | 6ptb.2 | 6pte.1 | 6pte.2 | 6pte.3 | 6pte.4 | 6puc.1 | 6puc.2 | 6pud.1 | 6pud.2 | 6pue.1 | 6pue.2 | 6puf.1 | 6puf.2 | 6pug.1 | 6pug.2 | 6puh.1 | 6puh.2 | 6pui.1 | 6pui.2 | 6puj.1 | 6puj.2 | 6puk.1 | 6puk.2 | 6pul.1 | 6pul.2 | 6pum.1 | 6pum.2 | 6pvc.1 | 6pvc.2 | 6pvd.1 | 6pvd.2 | 6pyl.1 | 6pyw.1 | 6q3k.1 | 6q3s.1 | 6r2l.1 | 6rp9.1 | 6rp9.2 | 6rpa.1 | 6rpb.1 | 6rpb.2 | 6rpb.3 | 6rpb.4 | 6rsy.1 | 6rsy.2 | 6ss7.1 | 6ss7.2 | 6ss8.1 | 6ss8.2 | 6ss9.1 | 6ss9.2 | 6ssa.1 | 6ssa.2 | 6ssa.3 | 6ssa.4 | 6tdo.1 | 6tdp.1 | 6tdq.1 | 6tdq.2 | 6tdr.1 | 6tdr.2 | 6tds.1 | 6tds.2 | 6tmo.1 | 6trn.1 | 6tro.1 | 6ujo.1 | 6ujq.1 | 6uk2.1 | 6uk4.1 | 6uli.1 | 6ulk.1 | 6uz1.1 | 6uz1.2 | 6uzm.1 | 6uzn.1 | 6uzo.1 | 6uzp.1 | 6uzq.1 | 6uzs.1 | 6v2o.1 | 6v2p.1 | 6v2q.1 | 6v3j.1 | 6v7y.1 | 6v7z.1 | 6v7z.2 | 6v80.1 | 6v80.2 | 6vb0.1 | 6vb3.1 | 6vb7.1 | 6viu.1 | 6vm7.1 | 6vm8.1 | 6vm9.1 | 6vma.1 | 6vmc.1 | 6vmx.1 | 6vmx.2 | 6vpz.1 | 6vq2.1 | 6vqd.1 | 6vqe.1 | 6vqo.1 | 6vqo.2 | 6vr1.1 | 6vr1.2 | 6vr5.1 | 6vr5.2 | 6vrm.1 | 6vrn.1 | 6w9u.1 | 6w9u.2 | 6w9v.1 | 6w9v.2 | 6x00.1 | 6xqa.1 | 6xqa.2 | 6xqp.1 | 6xqp.2 | 6y26.1 | 6y27.1 | 6y28.1 | 6y29.1 | 6y2a.1 | 6y2b.1 | 6z9v.1 | 6z9v.2 | 6z9w.1 | 6z9w.2 | 6z9x.1 | 6z9x.2 | 6zkw.1 | 6zkx.1 | 6zky.1 | 6zkz.1 | 7alo.1 | 7alo.2 | 7bbg.1 | 7bh8.1 | 7ciq.1 | 7cir.1 | 7cis.1 | 7duu.1 | 7dyn.1 | 7dzm.1 | 7dzn.1 | 7edo.1 | 7jwi.1 | 7jyu.1 | 7jyu.2 | 7jyv.1 | 7jyw.1 | 7jyx.1 | 7jyx.2 | 7k80.1 | 7k80.2 | 7k81.1 | 7l1b.1 | 7l1c.1 | 7l1d.1 | 7lfz.1 | 7lg0.1 | 7lg2.1 | 7lg3.1 | 7lgd.1 | 7lgd.2 | 7lgt.1 | 7lgt.2 | 7lli.1 | 7lli.2 | 7llj.1 | 7llj.2 | 7m8s.1 | 7m8s.2 | 7m8t.1 | 7m8u.1 | 7mj6.1 | 7mj7.1 | 7mj8.1 | 7mj9.1 | 7mja.1 | 7mkb.1 | 7mle.1 | 7n1a.1 | 7n1a.2 | 7n1b.1 | 7n1b.2 | 7n1e.1 | 7n1f.1 | 7n2n.1 | 7n2o.1 | 7n2p.1 | 7n2q.1 | 7n2q.2 | 7n2r.1 | 7n2s.1 | 7n4k.1 | 7n5p.1 | 7n5q.1 | 7n5q.2 | 7n6d.1 | 7n6d.2 | 7n6d.3 | 7n6d.4 | 7n6e.1 | 7n6e.2 | 7n9j.1 | 7na5.1 | 7ndq.1 | 7ndt.1 | 7ndu.1 | 7nmd.1 | 7nmd.2 | 7nme.1 | 7nmf.1 | 7nmg.1 | 7nui.1 | 7ow3.1 | 7ow3.2 | 7ow3.3 | 7ow3.4 | 7ow4.1 | 7ow4.2 | 7ow4.3 | 7ow4.4 | 7ow5.1 | 7ow6.1 | 7p3d.1 | 7p3e.1 | 7p3e.2 | 7p49.1 | 7p49.2 | 7p49.3 | 7p49.4 | 7p4b.1 | 7p4b.2 | 7p4b.3 | 7p4b.4 | 7pb2.1 | 7pb2.2 | 7pbc.1 | 7pbe.1 | 7pbe.2 | 7pdw.1 | 7pdw.2 | 7q98.1 | 7q98.2 | 7q98.3 | 7q98.4 | 7q98.5 | 7q99.1 | 7q9a.1 | 7q9b.1 | 7qng.1 | 7qpj.1 | 7r7v.1 | 7r7w.1 | 7r7x.1 | 7r7x.2 | 7r80.1 | 7re7.1 | 7re7.2 | 7re8.1 | 7re8.2 | 7rk7.1 | 7rm4.1 | 7rm4.2 | 7rm4.3 | 7rm4.4 | 7rrg.1 | 7rtd.1 | 7rtr.1 | 7rzd.1 | 7rzj.1 | 7s79.1 | 7s7d.1 | 7s7e.1 | 7s7f.1 | 7s8a.1 | 7s8e.1 | 7s8f.1 | 7s8q.1 | 7s8q.2 | 7s8r.1 | 7s8r.2 | 7s8s.1 | 7sa2.1 | 7sig.1 | 7sis.1 | 7su9.1 | 7tlt.1 | 7tlt.2 | 7tuc.1 | 7tud.1 | 7tue.1 | 7u1r.1 | 7u21.1 | 7u21.2 | 7uc5.1 | 7uc5.2 | 7ufj.1 | 7ufj.2 | 7um2.1 | 7umg.1 | 7ur1.1 | 7zt2.1 | 7zt3.1 | 7zt4.1 | 7zt5.1 | 7zt7.1 | 7zt8.1 | 7zt9.1 | 7zuc.1 | 7zuc.2 | 8cx4.1 | 8dnt.1 | 8dnt.2 | 8dnt.3 | 8dnt.4 | 8e13.1 | 8e2z.1 | 8e8i.1 | 8eb2.1 | 8eb2.2 | 8eb2.3 | 8ek5.1 | 8emf.1 | 8emg.1 | 8emi.1 | 8emj.1 | 8emk.1 | 8en8.1 | 8en8.2 | 8enh.1 | 8enh.2 | 8enh.3 | 8enh.4 | 8eo8.1 | 8eo8.2 | 8eo8.3 | 8eo8.4 | 8es8.1 | 8es9.1 | 8fja.1 | 8fjb.1 | 8fu4.1 | 8gom.1 | 8gon.1 | 8gvb.1 | 8gvg.1 | 8gvi.1 | 8hn4.1 | 8sbk.1 | 8sbl.1 | 8sbl.2 | 8sbl.3 | 8sbl.4 | 8sgb.1 | 8sgm.1 | 8shi.1 | 8shi.2 | 8sos.1 | 8tbv.1 | 8tbv.2 | 8tbw.1 | 8tbw.2 | 8tuh.1 | 8u9g.1 | 8u9g.2

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
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Extreme

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