SMTL ID : 7ncc.1

Crystal structure of fructose-bisphosphate aldolase FBAP from Bacillus methanolicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x MLT: D-MALATE(Non-covalent)

MLT.1: 2 residues within 4Å: Chain A: G.212, P.214 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.214

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 9 residues within 4Å: Chain A: V.179, H.180, G.181, G.209, G.210, T.211, V.231, N.232, T.233 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.179, A:G.181, A:T.211, A:T.211, A:N.232, A:T.233 Water bridges: A:G.209 PO4.3: 6 residues within 4Å: Chain A: N.24, S.50, A.53, N.232, Q.236 Chain B: R.257 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.24, A:S.50, A:N.232 Water bridges: A:S.50, A:D.85, A:H.86, B:R.257, B:R.257 Salt bridges: B:R.257 PO4.4: 4 residues within 4Å: Chain A: G.190, F.191, D.192, R.193 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.192, A:R.193 Water bridges: A:D.192 Salt bridges: A:R.193 PO4.6: 8 residues within 4Å: Chain B: H.180, G.181, G.209, G.210, T.211, V.231, N.232, T.233 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.181, B:T.211, B:N.232, B:T.233 Water bridges: B:H.180, B:H.180, B:G.209, B:N.232 Salt bridges: B:H.180 PO4.7: 4 residues within 4Å: Chain B: G.190, F.191, D.192, R.193 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.190, B:D.192, B:D.192, B:D.192, B:R.193 Water bridges: B:F.191 Salt bridges: B:R.193 PO4.8: 6 residues within 4Å: Chain A: R.257 Chain B: N.24, S.50, A.53, N.232, Q.236 8 PLIP interactions: 1 interactions with chain A, 7 interactions with chain B Salt bridges: A:R.257 Hydrogen bonds: B:N.24, B:S.50, B:N.232, B:N.232 Water bridges: B:N.24, B:N.26, B:S.50

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 3 residues within 4Å: Chain B: S.109, H.110, R.140 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.109 Water bridges: B:G.139 pi-Stacking: B:H.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schultenkamper, K. et al., Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference. Front Microbiol (2021)

Release Date

2021-02-17

Peptides

Putative class II fructose-1,6-bisphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative class II fructose-1,6-bisphosphate aldolase