SMTL ID : 7nmq.1

Bacillus cereus HblL1 toxin component

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

monomer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: S.146, K.150, K.287, E.288, A.291, Y.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.146, A:A.291 PEG.2: 4 residues within 4Å: Chain A: M.328, Q.329, H.331, K.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.329, A:H.331 Water bridges: A:K.332 PEG.3: 2 residues within 4Å: Chain A: N.41, R.275 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.41, A:R.275 Water bridges: A:R.275, A:R.275

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: D.106, K.107, A.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.107, A:A.108 EDO.5: 4 residues within 4Å: Chain A: N.115, I.118, T.119, N.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.115, A:T.119 Water bridges: A:N.122 EDO.6: 6 residues within 4Å: Chain A: Y.27, R.184, Q.187, K.188, Y.259, Y.292 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.184, A:R.184, A:Q.187 Water bridges: A:Y.27, A:K.188 EDO.7: 4 residues within 4Å: Chain A: L.51, N.151, N.152, G.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.151, A:N.152, A:G.161 Water bridges: A:N.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Worthy, H.L. et al., The Crystal Structure of Bacillus cereus HblL 1 . Toxins (2021)

Release Date

2021-04-07

Peptides

Hemolysin BL lytic component L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hemolysin BL lytic component L1