SMTL ID : 7nyj.1

Structure of OBP1 from Varroa destructor, form P3<2>21

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.77, K.83 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.77, A:K.83, A:F.84, A:D.85, A:D.85 SO4.2: 2 residues within 4Å: Chain A: T.54, E.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.54, A:E.57

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: E.117 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.117, A:E.117 CA.4: 2 residues within 4Å: Chain A: E.17, E.22 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.17, A:E.17, H2O.1, H2O.4

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: D.121 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amigues, B. et al., A new non-classical fold of varroa odorant-binding proteins reveals a wide open internal cavity. Sci Rep (2021)

Release Date

2021-07-07

Peptides

Odorant Binding Protein 1 from Varoa destructor, form P3<2>21: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Odorant Binding Protein 1 from Varoa destructor, form P3<2>21

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