SMTL ID : 7o4q.1

Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme in space group C2221 (unliganded)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: E.430, T.458, L.459, L.575, K.578, I.579 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.430 Water bridges: A:N.431, A:R.523 GOL.2: 2 residues within 4Å: Chain A: K.381, P.411 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.381, A:K.381 GOL.14: 10 residues within 4Å: Chain B: I.36, L.39, R.40, H.43, L.46, E.48, I.51, M.79, L.115, M.268 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.43, B:E.48 GOL.15: 5 residues within 4Å: Chain B: G.131, G.132, M.134, G.135 Chain D: G.67 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:M.134, B:G.135, D:G.67 Water bridges: B:A.133 GOL.16: 3 residues within 4Å: Chain B: V.245, E.246, K.247 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.246, B:E.246, B:K.247 Water bridges: B:T.158, B:I.159 GOL.17: 6 residues within 4Å: Chain A: K.267 Chain B: G.232, G.233, F.234, D.235, D.236 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.233, B:F.234, B:D.235, B:D.235, B:D.236, B:D.236 GOL.28: 6 residues within 4Å: Chain C: E.430, T.458, L.459, L.575, K.578, I.579 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.430 Water bridges: C:N.431, C:R.523 GOL.29: 2 residues within 4Å: Chain C: K.381, P.411 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.381, C:K.381 GOL.41: 10 residues within 4Å: Chain D: I.36, L.39, R.40, H.43, L.46, E.48, I.51, M.79, L.115, M.268 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.43, D:E.48 GOL.42: 5 residues within 4Å: Chain B: G.67 Chain D: G.131, G.132, M.134, G.135 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:M.134, D:G.135, B:G.67 Water bridges: D:A.133 GOL.43: 3 residues within 4Å: Chain D: V.245, E.246, K.247 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.246, D:K.247 Water bridges: D:T.158, D:I.159 GOL.44: 6 residues within 4Å: Chain C: K.267 Chain D: G.232, G.233, F.234, D.235, D.236 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.233, D:F.234, D:D.235, D:D.235, D:D.236

42 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: Q.289, V.290, D.291 Chain D: H.24 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: P.647, L.648 Chain B: H.243 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain A: R.614, G.617, Y.623, A.624, D.625, G.626 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: T.673, S.674, T.675, A.676 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: R.718, L.735, S.736 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: R.614, K.627, R.628 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: P.236, K.239 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: K.149, K.193, R.401 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: S.373, L.374, E.375 Ligand excluded by PLIP SO4.13: 6 residues within 4Å: Chain A: D.484, K.485, M.486, P.487, G.513, K.514 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain B: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain B: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain B: R.195, L.201 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain B: P.193, R.195 Ligands: SO4.22 Ligand excluded by PLIP SO4.22: 8 residues within 4Å: Chain B: E.38, R.42, A.188, K.189, V.191, V.192, P.193 Ligands: SO4.21 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain B: R.382, R.402, V.403 Ligand excluded by PLIP SO4.24: 1 residues within 4Å: Chain B: R.382 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain B: R.285, V.287, A.314 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain B: T.317, V.318 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain B: T.304, R.308, D.340 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain C: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain B: H.24 Chain C: Q.289, V.290, D.291 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain C: P.647, L.648 Chain D: H.243 Ligand excluded by PLIP SO4.33: 6 residues within 4Å: Chain C: R.614, G.617, Y.623, A.624, D.625, G.626 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain C: T.673, S.674, T.675, A.676 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain C: R.718, L.735, S.736 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain C: R.614, K.627, R.628 Ligand excluded by PLIP SO4.37: 2 residues within 4Å: Chain C: P.236, K.239 Ligand excluded by PLIP SO4.38: 3 residues within 4Å: Chain C: K.149, K.193, R.401 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain C: S.373, L.374, E.375 Ligand excluded by PLIP SO4.40: 6 residues within 4Å: Chain C: D.484, K.485, M.486, P.487, G.513, K.514 Ligand excluded by PLIP SO4.45: 4 residues within 4Å: Chain D: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.46: 4 residues within 4Å: Chain D: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain D: R.195, L.201 Ligand excluded by PLIP SO4.48: 3 residues within 4Å: Chain D: P.193, R.195 Ligands: SO4.49 Ligand excluded by PLIP SO4.49: 8 residues within 4Å: Chain D: E.38, R.42, A.188, K.189, V.191, V.192, P.193 Ligands: SO4.48 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain D: R.382, R.402, V.403 Ligand excluded by PLIP SO4.51: 1 residues within 4Å: Chain D: R.382 Ligand excluded by PLIP SO4.52: 3 residues within 4Å: Chain D: R.285, V.287, A.314 Ligand excluded by PLIP SO4.53: 2 residues within 4Å: Chain D: T.317, V.318 Ligand excluded by PLIP SO4.54: 3 residues within 4Å: Chain D: T.304, R.308, D.340 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalwani, S. et al., Substrate specificity and conformational flexibility properties of the Mycobacterium tuberculosis beta-oxidation trifunctional enzyme. J.Struct.Biol. (2021)

Release Date

2021-08-25

Peptides

3-hydroxyacyl-CoA dehydrogenase: AC
Putative acyltransferase Rv0859: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

B
C

D
C

3-hydroxyacyl-CoA dehydrogenase

Putative acyltransferase Rv0859

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