SMTL ID : 7oa4.4 (3 other biounits)

Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x 0N8: (2Z)-4-[1-benzyl-4-(4-chlorobenzyl)piperidin-4-yl]-2-hydroxy-4-oxobut-2-enoic acid(Non-covalent)

0N8.1: 13 residues within 4Å: Chain A: L.31, M.32, H.35, D.53, T.78, D.80, D.93, Y.94, K.95, K.109 Ligands: FMT.2, MN.3, MN.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.35 Salt bridges: A:H.35, A:K.95 pi-Stacking: A:H.35

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 6 residues within 4Å: Chain A: M.32, H.35, D.36, N.52, D.53 Ligands: 0N8.1 No protein-ligand interaction detected (PLIP)

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 7 residues within 4Å: Chain A: H.35, D.80, D.93, Y.94, K.95 Ligands: 0N8.1, MN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.35, A:D.80, A:D.93, A:Y.94 MN.4: 5 residues within 4Å: Chain A: H.35, D.53, D.80 Ligands: 0N8.1, MN.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.53, A:D.80, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feracci, M. et al., Crystal structure of the N-terminal endonuclease domain of La Crosse virus L-protein bound to compound L-742,001. To Be Published

Release Date

2022-08-03

Peptides

N-terminal endonuclease domain of La Crosse virus L-protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
GGG

N-terminal endonuclease domain of La Crosse virus L-protein

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