- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.58 Å
- Oligo State
- homo-trimer
- Ligands
- 11 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 5 residues within 4Å:- Chain A: G.171, M.172, F.187
- Chain B: H.159
- Ligands: VFZ.10
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:H.159
- Hydrogen bonds: A:M.172
SO4.8: 6 residues within 4Å:- Chain A: R.10, W.28
- Chain B: R.10, W.28
- Chain C: R.10, W.28
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.28
SO4.9: 4 residues within 4Å:- Chain A: F.169, T.185, N.197, E.199
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.197
SO4.13: 6 residues within 4Å:- Chain B: S.153, G.171, M.172, F.187
- Chain C: H.159
- Ligands: VFZ.15
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:S.153, B:M.172
- Salt bridges: C:H.159
SO4.14: 4 residues within 4Å:- Chain B: F.169, T.185, N.197, E.199
No protein-ligand interaction detected (PLIP)SO4.19: 6 residues within 4Å:- Chain A: H.159
- Chain C: S.153, G.171, M.172, F.187
- Ligands: VFZ.21
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:S.153, C:M.172
- Salt bridges: A:H.159
SO4.20: 4 residues within 4Å:- Chain C: F.169, T.185, N.197, E.199
No protein-ligand interaction detected (PLIP)- 3 x VFZ: ~{N}-[(5-azanyl-1,3,4-oxadiazol-2-yl)methyl]-2-(2-chlorophenyl)sulfanyl-~{N}-[(6-oxidanylidene-1~{H}-pyridin-3-yl)methyl]ethanamide(Non-covalent)
VFZ.10: 16 residues within 4Å:- Chain A: M.117, I.133, V.135, N.136, S.153, G.154, Y.155, F.169, M.172
- Chain B: D.73, H.121, A.139, A.141, H.159, Q.160
- Ligands: SO4.7
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:V.135, A:V.135, A:N.136, B:A.141
- Hydrogen bonds: A:G.154, B:D.73, B:Q.160
VFZ.15: 15 residues within 4Å:- Chain B: M.117, I.133, V.135, N.136, S.153, G.154, Y.155, F.169, M.172
- Chain C: L.74, H.121, A.139, A.141, Q.160
- Ligands: SO4.13
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:V.135, B:V.135, B:N.136, C:A.141
- Hydrogen bonds: B:G.154, C:D.73
- pi-Cation interactions: C:H.159
VFZ.21: 15 residues within 4Å:- Chain A: D.73, L.74, H.121, A.139, A.141, H.159, Q.160
- Chain C: M.117, V.135, N.136, S.153, G.154, Y.155, M.172
- Ligands: SO4.19
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:V.135, C:N.136, A:A.141
- Hydrogen bonds: C:G.154
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ryan, M.D. et al., Discovery of Novel UDP- N -Acetylglucosamine Acyltransferase (LpxA) Inhibitors with Activity against Pseudomonas aeruginosa . J.Med.Chem. (2021)
- Release Date
- 2021-10-06
- Peptides
- Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.58 Å
- Oligo State
- homo-trimer
- Ligands
- 11 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 3 x VFZ: ~{N}-[(5-azanyl-1,3,4-oxadiazol-2-yl)methyl]-2-(2-chlorophenyl)sulfanyl-~{N}-[(6-oxidanylidene-1~{H}-pyridin-3-yl)methyl]ethanamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ryan, M.D. et al., Discovery of Novel UDP- N -Acetylglucosamine Acyltransferase (LpxA) Inhibitors with Activity against Pseudomonas aeruginosa . J.Med.Chem. (2021)
- Release Date
- 2021-10-06
- Peptides
- Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C