SMTL ID : 7pea.1

cryo-EM structure of DEPTOR bound to human mTOR complex 1, overall refinement

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 8 residues within 4Å: Chain A: K.1655, S.1658, K.1662, Y.1698, K.1702, R.1749, K.1753, W.1786 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.1658 Salt bridges: A:K.1655, A:K.1655, A:K.1662, A:K.1702, A:K.1702, A:K.1702, A:K.1706, A:R.1749, A:R.1749, A:K.1753, A:K.1753, A:K.1788, A:K.1788 IHP.2: 8 residues within 4Å: Chain E: K.1655, S.1658, K.1662, Y.1698, K.1702, R.1749, K.1753, W.1786 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:S.1658 Salt bridges: E:K.1655, E:K.1655, E:K.1662, E:K.1702, E:K.1702, E:K.1702, E:K.1706, E:R.1749, E:R.1749, E:K.1753, E:K.1753, E:K.1788, E:K.1788

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walchli, M. et al., Regulation of human mTOR complexes by DEPTOR. Elife (2021)

Release Date

2021-09-08

Peptides

Serine/threonine-protein kinase mTOR: AE
Target of rapamycin complex subunit LST8: BF
Regulatory-associated protein of mTOR: CG
DEP domain-containing mTOR-interacting protein: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E
A

B
D

F
C

C
F

G
E

D
J

H
I

Serine/threonine-protein kinase mTOR

Target of rapamycin complex subunit LST8

Regulatory-associated protein of mTOR

DEP domain-containing mTOR-interacting protein

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