SMTL ID : 7qe7.1

High-resolution structure of the Anaphase-promoting complex/cyclosome (APC/C) bound to co-activator Cdh1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-2-2-1-1-2-2-2-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain D: C.221, C.224, C.231, C.233 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.221, D:C.224, D:C.231, D:C.233 ZN.2: 4 residues within 4Å: Chain G: C.378, C.381, C.396, C.401 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.378, G:C.381, G:C.396, G:C.401 ZN.3: 5 residues within 4Å: Chain G: C.406, K.408, C.409, H.414, C.419 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.406, G:C.409, G:H.414, G:C.419 ZN.4: 4 residues within 4Å: Chain U: C.23, C.26, H.56, C.59 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:C.23, U:C.26, U:H.56, U:C.59 ZN.5: 4 residues within 4Å: Chain U: C.34, C.37, C.44, H.58 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:C.34, U:C.37, U:C.44, U:H.58 ZN.6: 5 residues within 4Å: Chain U: C.51, H.53, C.73, M.75, C.76 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:C.51, U:H.53, U:C.73, U:C.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoefler, A. et al., High-resolution structure of the Anaphase-promoting complex (APC/C) bound to co-activator Cdh1. To Be Published

Release Date

2022-01-26

Peptides

Anaphase-promoting complex subunit 10: A
Anaphase-promoting complex subunit 15: B
Anaphase-promoting complex subunit 1: C
Anaphase-promoting complex subunit 2: D
Anaphase-promoting complex subunit 4: E
Anaphase-promoting complex subunit 5: F
F-box only protein 5: G
Cell division cycle protein 16 homolog: HO
Anaphase-promoting complex subunit CDC26: IJ
Anaphase-promoting complex subunit 13: K
Anaphase-promoting complex subunit 16: L
Cell division cycle protein 27 homolog: MN
Anaphase-promoting complex subunit 7: PS
Cell division cycle protein 23 homolog: QR
Fizzy-related protein homolog: T
Anaphase-promoting complex subunit 11: U

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
D

C
A

D
N

E
I

F
O

G
S

H
K

O
Q

I
G

J
W

K
M

L
H

M
J

N
P

P
Y

S
Z

Q
U

R
V

T
R

U
C

Anaphase-promoting complex subunit 10

Anaphase-promoting complex subunit 15

Anaphase-promoting complex subunit 1

Anaphase-promoting complex subunit 2

Anaphase-promoting complex subunit 4

Anaphase-promoting complex subunit 5

F-box only protein 5

Cell division cycle protein 16 homolog

Anaphase-promoting complex subunit CDC26

Anaphase-promoting complex subunit 13

Anaphase-promoting complex subunit 16

Cell division cycle protein 27 homolog

Anaphase-promoting complex subunit 7

Cell division cycle protein 23 homolog

Fizzy-related protein homolog

Anaphase-promoting complex subunit 11

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