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SMTL ID : 7rc9.1

Crystal structure of human TLR8 ectodomain bound to small molecule antagonist 21

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.76 Å
Oligo State
homo-dimer
Ligands
2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
14 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x RQY: 2-(2,6-dimethylpyridin-4-yl)-5-(piperidin-4-yl)-3-(propan-2-yl)-1H-indole(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Sreekantha, R.K. et al., Identification of 2-Pyridinylindole-Based Dual Antagonists of Toll-like Receptors 7 and 8 (TLR7/8). Acs Med.Chem.Lett. (2022)
Release Date
2022-05-04
Peptides
Toll-like receptor 8: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B