SMTL ID : 7s0w.1 (1 other biounit)

Crystal structure of the T337M variant of human PGM-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: S.140, D.311, D.313, D.315, R.316 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.140, A:D.311, A:D.313, A:D.315, H2O.1

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.526, S.528, R.538 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.526, A:R.538 SO4.3: 2 residues within 4Å: Chain A: K.493, R.514 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.493, A:R.514 SO4.4: 5 residues within 4Å: Chain A: S.43, R.46, S.140, H.141, R.316 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.43 Salt bridges: A:R.46, A:H.141, A:R.316 SO4.5: 2 residues within 4Å: Chain A: R.108, I.129 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.108 SO4.6: 4 residues within 4Å: Chain A: R.240, R.244, P.267, N.269 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.269 Water bridges: A:R.240 Salt bridges: A:R.240, A:R.244 SO4.8: 5 residues within 4Å: Chain A: Y.89, M.90, K.91, E.92, E.278 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.89, A:K.91, A:E.92, A:E.278 Salt bridges: A:K.91 SO4.9: 2 residues within 4Å: Chain A: P.143, H.284 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.284 SO4.10: 5 residues within 4Å: Chain A: H.141, R.316, S.401, R.450, R.538 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:H.141, A:R.316, A:R.450, A:R.538 SO4.11: 3 residues within 4Å: Chain A: R.244, T.298, H.304 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.298 Salt bridges: A:R.244, A:H.304

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 2 residues within 4Å: Chain A: R.46, N.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stiers, K.M. et al., Effects of the T337M and G391V disease-related variants on human phosphoglucomutase 1: structural disruptions large and small. Acta Crystallogr.,Sect.F (2022)

Release Date

2022-05-04

Peptides

Phosphoglucomutase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoglucomutase-1

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